Transcription Factor
| Accessions: | T11553 (AthalianaCistrome v4_May2016), Q9LJG8 (JASPAR 2024) |
| Names: | At3g14180, T11553;, 6B-interacting protein 1-like 2, ASIL2_ARATH, Trihelix DNA-binding protein ASIL2, Trihelix transcription factor ASIL2 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:Trihelix |
| Length: | 443 |
| Pfam Domains: | 81-172 Myb/SANT-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MEDDEDIRSQGSDSPDPSSSPPAGRITVTVASAGPPSYSLTPPGNSSQKDPDALALALLP 60 61 IQASGGGNNSSGRPTGGGGREDCWSEAATAVLIDAWGERYLELSRGNLKQKHWKEVAEIV 120 121 SSREDYGKIPKTDIQCKNRIDTVKKKYKQEKVRIANGGGRSRWVFFDKLDRLIGSTAKIP 180 181 TATSGVSGPVGGLHKIPMGIPMGSRSNLYHQQAKAATPPFNNLDRLIGATARVSAASFGG 240 241 SGGGGGGGSVNVPMGIPMSSRSAPFGQQGRTLPQQGRTLPQQQQQGMMVKRCSESKRWRF 300 301 RKRNASDSDSESEAAMSDDSGDSLPPPPLSKRMKTEEKKKQDGDGVGNKWRELTRAIMRF 360 361 GEAYEQTENAKLQQVVEMEKERMKFLKELELQRMQFFVKTQLEISQLKQQHGRRMGNTSN 420 421 DHHHSRKNNINAIVNNNNDLGNN |
| Interface Residues: | 268, 270, 272, 274, 295, 297, 300, 305, 307, 309, 310, 377 |
| 3D-footprint Homologues: | 7cuh_A |
| Binding Motifs: | M0777 TCrCCGGArAw MA2039.1 / UN0352.1 wtCTCCGGCGamd MA2039.2 CTCCGGCGa |
| Binding Sites: | UN0352.1.1 MA2039.1.4 / UN0352.1.10 UN0352.1.11 MA2039.1.5 / UN0352.1.12 MA2039.1.6 / UN0352.1.13 UN0352.1.14 UN0352.1.15 MA2039.1.7 / UN0352.1.16 MA2039.1.8 / UN0352.1.17 MA2039.1.9 / UN0352.1.18 UN0352.1.19 UN0352.1.2 MA2039.1.10 / UN0352.1.20 MA2039.1.1 / UN0352.1.3 UN0352.1.4 MA2039.1.2 / UN0352.1.5 UN0352.1.6 MA2039.1.3 / UN0352.1.7 UN0352.1.8 UN0352.1.9 MA2039.1.11 MA2039.1.12 MA2039.1.13 MA2039.1.14 MA2039.1.15 MA2039.1.16 MA2039.1.17 MA2039.1.18 MA2039.1.19 MA2039.1.20 MA2039.2.1 / MA2039.2.5 / MA2039.2.6 / MA2039.2.9 MA2039.2.10 / MA2039.2.20 / MA2039.2.4 / MA2039.2.8 MA2039.2.11 MA2039.2.12 / MA2039.2.16 MA2039.2.13 MA2039.2.14 MA2039.2.15 / MA2039.2.18 MA2039.2.17 MA2039.2.19 MA2039.2.2 MA2039.2.3 MA2039.2.7 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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