Transcription Factor

						

			
Accessions: T136825_1.02 (CISBP 1.02)

			
Names: rib, T136825_1.02;
Organisms: Drosophila melanogaster
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:B1H, family:Pipsqueak
Length: 661
Pfam Domains:    34-134 BTB/POZ domain
  373-416 helix-turn-helix, Psq domain
Sequence: 
(in bold interface residues)		   1 MGGPTAPVASSGEVGQTYCLRWNNHQTNLVQILHALHEVGSYVDCSLVVDDEQFQAHRVV   60
  61 LAANSPYFQHILKDVPQDHCSIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKE  120
 121 LQVKGLYDNLMKFNHASVTPTSSSGAGGAKPQNGSASNHSSSVISTSTHISPSAAISSSC  180
 181 SPPPPPQFGYQPGYSHYPQQQPMSASQIPAGEAPLTPTQATPHSAASGAGEAGGQWPLTP  240
 241 SAAAAMLNSVYESAADMNPLKRKKLSAISSMLLSGNRDTPILRNVLAQANPADSSQPGPM  300
 301 NANGEKTPTHPHQNTQLPAGLGVSGGERNHSFNGSDYGGDKEPLSPYTDRSFEEETGQSG  360
 361 GKKPEWKRYKQYTRADMMCAIQAVREGMSALQASRKYGLPSRTLYDKVRKLNITTGRGTH  420
 421 RTPKRSPPGAESSQGFSYSAAAAAAAHNYGHGHGHHSEVKRDQKVDHVPAHHGMPPTIPP  480
 481 SAAALLDHAFLQQALENRGGDMAGREALHAMALAAAAHAAANRLSSSPAEMDQRSNGHGM  540
 541 RSPSPQGRHYPHEQEAMDLEMEKHEQNIIKRERDQDEREDADDEEDHEQEHVEDLSLARK  600
 601 ERPPSPYSPQPTEAGAGVIMHASSASANGKDHVDYPSSPQFVPIGLKRELMEGEDAQARA  660
 661 D
Interface Residues: 201, 203, 206, 207, 213, 439, 447
3D-footprint Homologues: 6chv_D, 7cq4_A
Binding Motifs: M5167_1.02 wwTTTyGCr
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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