Transcription Factor
| Accessions: | T089320_1.02 (CISBP 1.02) |
| Names: | FGSG_07914T0, T089320_1.02; |
| Organisms: | Gibberella zeae |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 605 |
| Pfam Domains: | 240-289 Homeobox domain 248-287 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 MEFLIDDIFFTQSDSSAQTLAYGETEHHSPQSPGSSNSPAGRANNVESIPQTINPQDVFD 60 61 LPSSQLQDFQIDWDADFQQPKSASDVMTDHLNPDFSFLNQPHDSWNISAPLPTATGSVQT 120 121 PLTSIDEFLIKNGASRPPAPCTNCRRSRLQCLILQTTLANPNPDSSCSTCVALFRECSLS 180 181 GRKKREPSDFETLEPVIGRLHGVSEHGILGVPPTVEEGQPSQGLSIAELSGKRTNTRSVR 240 241 KTRVLRNWYLSNLDHPYPSEEEKVGLAQQSGLSRSQVVNWFANSRRRHRLASTYSAVPTR 300 301 GRQGSAPASPMPRYLRKNMSPMDRWKNSPPDQEPASATAIQNALAAQSSDPSSLDSDNLG 360 361 GSGPGSSASNDSLWPSTLHDASSNSASSCYSFRSRDGKLYPRSGNSSVAEGTSTSRPTST 420 421 RSRSKKLVAFQCTFCRQSFKKKYDWVRHERSIHLPGLDSWVCTLPVTPGQSLLVWRMNEE 480 481 GPQCLFCGSDSPNDEHIQAHEFDTCAERPVSERKFTRKDHLWQHLHKFHGCRRWEGWLPD 540 541 LSLLQYRQDTIRSQCGFCQATMNSWEARTDHVAAHYRDGFTMEQWVGGSGVHVHDPSDMD 600 601 NERQS |
| Interface Residues: | 148, 149, 233, 234, 237, 278, 279, 282, 283, 286, 287, 441, 443, 444, 447, 468, 469, 470, 471, 493, 495, 496, 517, 519, 520, 523, 527 |
| 3D-footprint Homologues: | 3coq_A, 7uik_T, 1puf_B, 1au7_A, 3l1p_A, 7xrc_C, 7q3o_C, 2xsd_C, 1du0_A, 6a8r_A, 3cmy_A, 1mnm_C, 6fqq_E, 4xrm_B, 1fjl_B, 4xrs_G, 1k61_B, 8g87_X, 6es3_K, 1zq3_P, 5zfz_A, 1le8_B, 6fqp_B, 4qtr_D, 2d5v_B, 2hos_A, 6e94_A, 2i13_A, 7y3m_I |
| Binding Motifs: | M0825_1.02 ygACATGTaca |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.