Transcription Factor

						

			
Accessions: T146184_1.02 (CISBP 1.02)

			
Names: egl-13, T146184_1.02;
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Sox
Length: 319
Pfam Domains:   175-230 Domain of unknown function (DUF1898)
  178-246 HMG (high mobility group) box
Sequence: 
(in bold interface residues)		   1 MWPMVQMLHAGNFDSEMLLRQHELMQHQQQQMIIANMLKATQSLPLLFNGGLNYEAILNN   60
  61 PVLNATIAGHLPNPLASNISLLQKSISAKLAAAGNMQTVEKVETPLNLSKDTPSPTAIPQ  120
 121 SPLSGFRLPYSLGTNYGSDGQLFNNCSPNSSGKSTPGNTSVTSEVATPRPQAKSPNHIKR  180
 181 PMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLHME  240
 241 QHPDYRYRPRPKRTCVIDGKKVRVNEYKTIMKTKKDLMWGDEPGFSQPSDLQMDLASHVN  300
 301 LLNDLTQHHHQSHLLQTAE
Interface Residues: 180, 183, 185, 186, 189, 193, 204, 205, 206, 209, 247
3D-footprint Homologues: 2lef_A, 4y60_C, 1o4x_B, 3f27_D, 6jrp_D, 1qrv_A, 3u2b_C, 7m5w_A, 2gzk_A, 4s2q_D, 1j5n_A, 1hry_A
Binding Motifs: M1609_1.02 wrAACAATag
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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