Transcription Factor

						

			
Accessions: Q4H3C7 (JASPAR 2024)

			
Names: Q4H3C7_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H3C7
Length: 733
Pfam Domains:   368-424 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MKNGQEKAPAATKYSVAASNTQNSGDYFGKKRAGNNIEDLGSYYMGVEGHNTTNAAIENY   60
  61 QHTESAKGRNQSNGTSSSRIDQPGYTEQSTHTIASQRVYNLDYEVERIDGSDVIDENSTS  120
 121 VTSQECRGFGIYSGCDSVSEAINANNSNNRSSFGEKENGVVIPAAIFHDNDLQKQSQESI  180
 181 GSHKSQQGEELARISTSELLASSVVDAKSDLYSPLSPNSGAVLMSPRGRTLIQTPGSEGS  240
 241 PGPEMSKSPASELQIAADPRLSVRGYETGQAAQSGAVSDATITDSGANQQCSKVRSGAED  300
 301 SMDLDINSKQTGIRENGGDTTNPKHQQNKDPGIFDWMLESRKNQKKKHSSSESNSSSGDG  360
 361 DKCYSASKRERTAYTNSQLVELEKEFHFSHYLCRPRRIELAQGLGLTERQIKIWFQNRRM  420
 421 KFKKEQKQKAVLQRNNGDSVMGAHGHQHHYPPNPYLRAQPILYQEEMNGKCIQNNYMGPE  480
 481 VNGGHFTNGVEAIPDHNMCDMSNTVSPTHQLQAFVTSSTMAARQAAPMHRHAVNSQITRS  540
 541 PSSGASNASSPQNIKSIFQQDQTSTSSVVTSPMNDQRRHNDVTGYYQPHRTSDHSNFFEK  600
 601 QTERNRDDKRDDDAIYRSAARQNNHSQANGLRYHQHRPITSFSDYVHGGRGQEIGEIPPL  660
 661 NPFTHASQRNLPHQFLPLYYGSTPDYISSCSAMGVTGTEKSPATPLDYSRSAYPTHGEKT  720
 721 ILPHGHFQRLTHL
Interface Residues: 335, 338, 339, 342, 367, 368, 369, 370, 371, 409, 410, 412, 413, 416, 417, 420, 421, 424
3D-footprint Homologues: 5zfz_A, 3a01_E, 6a8r_A, 3cmy_A, 1fjl_B, 3d1n_M, 1ig7_A, 2h1k_B, 1puf_A, 1nk2_P, 1zq3_P, 6m3d_C, 1jgg_B, 3lnq_A, 2lkx_A, 7q3o_C, 6es3_K, 2ld5_A, 2hdd_A, 1au7_A, 5jlw_D, 3rkq_B, 2r5y_A, 1puf_B, 4xrs_G, 2hos_A, 1b72_A, 4cyc_A, 5flv_I, 3l1p_A, 5zjt_E, 7psx_B, 5hod_A, 1e3o_C, 1le8_A, 7xrc_C, 2xsd_C, 4xrm_B, 1o4x_A, 8g87_X, 1du0_A, 4qtr_D
Binding Motifs: MA1884.1 wwwwwrwTAATgAtwwwwww
MA1884.2 TAATgA
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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