Transcription Factor
| Accessions: | T109460_1.02 (CISBP 1.02), T22169 (AthalianaCistrome v4_May2016), Q9FGJ1 (JASPAR 2024) |
| Names: | AT5G47660, T109460_1.02;, T22169;, Homeodomain-like superfamily protein, Q9FGJ1_ARATH, Similarity to DNA-binding protein GT |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, AthalianaCistrome v4_May2016 2, JASPAR 2024 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:MADF, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:Trihelix |
| Length: | 398 |
| Pfam Domains: | 302-384 Myb/SANT-like DNA-binding domain 324-363 Myb/SANT-like DNA-binding domain 326-384 Alcohol dehydrogenase transcription factor Myb/SANT-like |
| Sequence: (in bold interface residues) | 1 MELLAGDCRKRVGDDFEEDINPFDGSDGGCGWMYGTRQMGSNGNDDALATLADLASPPQK 60 61 LKPIRCGVKLPSSSEDRHPLDILAGTLDRLPEMGFGCFEAPLGSKIADVEESGQLTRGFS 120 121 KEEDDSLPPLQMEFQARNRISWDGLSLSSSVDSSDSDSSPDVRKTVTGKRKRETRVKLEH 180 181 FLEKLVGSMMKRQEKMHNQLINVMEKMEVERIRREEAWRQQETERMTQNEEARKQEMARN 240 241 LSLISFIRSVTGDEIEIPKQCEFPQPLQQILPEQCKDEKCESAQREREIKFRYSSGSGSS 300 301 GRRWPQEEVQALISSRSDVEEKTGINKGAIWDEISARMKERGYERSAKKCKEKWENMNKY 360 361 YRRVTEGGQKQPEHSKTRSYFEKLGNFYKTISSGEREK |
| Interface Residues: | 106, 348, 351, 352 |
| 3D-footprint Homologues: | 2q2u_C, 6kks_A |
| Binding Motifs: | M1278_1.02 wTTACCGy M0788 / MA1365.1 wwhhwTTTTwACyGy M0770 wwahhrCrGTwAAwa MA1365.2 awGGTAAAAww MA1365.3 GGTAAAA |
| Binding Sites: | MA1365.2.1 MA1365.2.10 MA1365.2.11 MA1365.2.12 / MA1365.2.7 MA1365.2.13 / MA1365.2.8 MA1365.2.14 MA1365.2.15 / MA1365.2.9 MA1365.2.10 / MA1365.2.16 MA1365.2.11 / MA1365.2.17 MA1365.2.18 MA1365.2.12 / MA1365.2.19 MA1365.2.2 MA1365.2.13 / MA1365.2.20 MA1365.2.3 MA1365.2.4 MA1365.2.3 / MA1365.2.5 MA1365.2.4 / MA1365.2.6 MA1365.2.5 / MA1365.2.7 MA1365.2.6 / MA1365.2.8 MA1365.2.9 MA1365.2.14 MA1365.2.15 MA1365.2.16 MA1365.2.17 MA1365.2.18 MA1365.2.19 MA1365.2.20 MA1365.3.1 / MA1365.3.10 / MA1365.3.18 / MA1365.3.2 / MA1365.3.3 MA1365.3.11 / MA1365.3.13 / MA1365.3.14 / MA1365.3.15 / MA1365.3.16 / MA1365.3.4 / MA1365.3.5 / MA1365.3.7 / MA1365.3.8 MA1365.3.12 / MA1365.3.20 / MA1365.3.6 MA1365.3.17 MA1365.3.19 MA1365.3.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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