Transcription Factor
| Accessions: | T08630 (AthalianaCistrome v4_May2016), O22230 (JASPAR 2024) |
| Names: | AT2G41690, HSFB3, T08630;, AtHsf-05, AtHsfB3, Heat stress transcription factor B-3, HSFB3_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:HSF |
| Length: | 244 |
| Pfam Domains: | 41-133 HSF-type DNA-binding |
| Sequence: (in bold interface residues) | 1 MEDAGEHLRCNDNVNDEERLPLEFMIGNSTSTAELQPPPPFLVKTYKVVEDPTTDGVISW 60 61 NEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFRKGQ 120 121 RELMSNIRRRKSQHWSHNKSNHQVVPTTTMVNQEGHQRIGIDHHHEDQQSSATSSSFVYT 180 181 ALLDENKCLKNENELLSCELGKTKKKCKQLMELVERYRGEDEDATDESDDEEDEGLKLFG 240 241 VKLE |
| Interface Residues: | 85, 86, 91, 93, 94, 95, 97, 98, 113, 129, 130, 133 |
| 3D-footprint Homologues: | 5hdn_C, 5d5w_B, 3hts_B, 5d5v_B, 7dci_A, 2vy1_A |
| Binding Motifs: | M0455 AAgcTTCTAGAAg M0463 cTTCTAGAakcTTcy MA1761.1 AAgcTTCTAGAAg MA1761.2 AAgcTTCTAGAA |
| Publications: | Wu C. Heat shock transcription factors: structure and regulation. Annu Rev Cell Dev Biol : (1995;11:441-69.). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.