Transcription Factor
| Accessions: | Q4H303 (JASPAR 2024) |
| Names: | Otx, Q4H303_CIOIN, Transcription factor protein |
| Organisms: | Ciona intestinalis |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q4H303 |
| Length: | 425 |
| Pfam Domains: | 66-122 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MSYLKSPHYAMNGLGLGHDMNLLHPTVTYPGDSAACYFQRIQGMHQGAKNMQFAAPPVYS 60 61 SSRKQRRERTTFTRAQLDILEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 120 121 RQQVQQQQQKQKSGSGGSSSNSSSSTGSSSSGSASSTNSNNNSSSSSNKKKSPPTTPTPT 180 181 ANGPTTSSSPFQQHGAPSAHAPHAQSTSPPLPSSPVSSNGQIAPSVTPSELMSANGPAPI 240 241 SLPGSHGAHSGMVHNGSSSNIWSPASVSPGASSDGASNVPGIGYTGALGSNNSPYMAAAA 300 301 AVAHAAHSPYSATSNAQVSSTGYPQNYHTSHSYFGTMEASYLPSVPFPGAAPGCGMGDMS 360 361 MAGQQSAAQLGHHGTGQPHPASHHQFMSQSYPYHHASSGVTPTYPTVSDCLDYKDQTQAW 420 421 KFQVL |
| Interface Residues: | 34, 35, 36, 37, 39, 40, 43, 46, 47, 50, 65, 66, 67, 68, 69, 107, 108, 110, 111, 114, 115, 117, 118, 119, 121, 122 |
| 3D-footprint Homologues: | 1o4x_A, 1e3o_C, 1au7_A, 8bx1_A, 4j19_B, 3d1n_M, 8ejp_B, 1fjl_B, 6a8r_A, 8pmf_A, 1ig7_A, 3cmy_A, 5zfz_A, 1puf_A, 3lnq_A, 1nk2_P, 1zq3_P, 1jgg_B, 2lkx_A, 6m3d_C, 7q3o_C, 2ld5_A, 6es3_K, 2hdd_A, 5zjt_E, 2r5y_A, 1puf_B, 8osb_E, 7psx_B, 5hod_A, 2hos_A, 8eml_B, 1b72_A, 3a01_E, 5jlw_D, 3rkq_B, 4xrs_G, 2d5v_B, 9b8u_A, 4cyc_A, 8ik5_C, 5flv_I, 1le8_A, 4qtr_D, 8g87_X, 1du0_A |
| Binding Motifs: | MA1908.1 wwwmrvmtTAATCCgmwwwwwh MA1908.2 tTAATCCg |
| Publications: | Roure A, Lemaire P, Darras S. An otx/nodal regulatory signature for posterior neural development in ascidians. PLoS Genet : (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.