Transcription Factor
| Accessions: | Q38Q39 (JASPAR 2024), T00109 (AthalianaCistrome v4_May2016) |
| Names: | ERF27_ARATH, AT1G12630, T00109; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 192 |
| Pfam Domains: | 17-66 AP2 domain |
| Sequence: (in bold interface residues) | 1 MNSSMASAGLGSRRKDPVYRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVA 60 61 AMALKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAAMKGCEEGEEEKKAKEKKSSS 120 121 SKSRARECHVDNDVGSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDDS 180 181 PENSNDEDLWGY |
| Interface Residues: | 7, 23, 24, 25, 30, 32, 34, 39, 41, 43, 47 |
| 3D-footprint Homologues: | 5wx9_A, 1gcc_A, 6e0p_A, 7wq5_A, 7et4_D, 7ywx_E, 6mup_E, 6buz_A |
| Binding Motifs: | M0038 / MA1227.1 ygycryydyykyyrCCGACAm M0028 kwwwtTGTCGGYarar MA1227.2 hwtyrCCGACAwwww MA1227.3 rCCGACA |
| Binding Sites: | MA1227.1.1 MA1227.1.10 MA1227.1.11 MA1227.1.12 MA1227.1.13 MA1227.1.14 MA1227.1.15 MA1227.1.16 MA1227.1.17 MA1227.1.18 MA1227.1.19 MA1227.1.2 MA1227.1.20 MA1227.1.3 MA1227.1.4 MA1227.1.5 MA1227.1.6 MA1227.1.7 MA1227.1.8 / MA1227.1.9 MA1227.2.1 MA1227.2.10 MA1227.2.11 MA1227.2.12 MA1227.2.13 MA1227.2.14 MA1227.2.15 MA1227.2.16 MA1227.2.17 MA1227.2.18 MA1227.2.19 MA1227.2.2 MA1227.2.20 MA1227.2.3 MA1227.2.4 MA1227.2.5 MA1227.2.6 MA1227.2.7 MA1227.2.8 MA1227.2.9 MA1227.3.1 / MA1227.3.10 / MA1227.3.13 / MA1227.3.17 / MA1227.3.19 / MA1227.3.3 MA1227.3.16 / MA1227.3.9 MA1227.3.11 / MA1227.3.12 / MA1227.3.4 / MA1227.3.7 MA1227.3.18 MA1227.3.14 / MA1227.3.6 MA1227.3.8 MA1227.3.15 / MA1227.3.5 MA1227.3.2 MA1227.3.20 |
| Publications: | Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed] |
| Related annotations: | PaperBLAST |
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