Transcription Factor

						

			
Accessions: T060942_1.02 (CISBP 1.02)

			
Names: NCU01640, T060942_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 693
Pfam Domains:   560-583 C2H2-type zinc finger
  612-642 C2H2-type zinc finger
  650-674 Zinc finger, C2H2 type
  650-674 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MPLMPQPTLMPLLQSPSPQHQHQQQQQHRAIGYPQRTLLPQQKQPQQQQPLAYLTSNFNP   60
  61 QQSSVASFNSSPAFTTISDFDQDFDQDYSNCPSLTASPVSTYSLPAYSSTSQQGSSLSAF  120
 121 DSIPNTTTVPRAAQGAAEPLFNLWADPMQTETWLQPADQLTSKSAGRYGHHRESSLSSLG  180
 181 SAGPASPYSNNTSNPQIAVTDFNDFSGFEDLNYHLVPSKASATLHPSFPGYANSNAVPIN  240
 241 GYSRAPAVSKQNNNKSFRQEQSVGSNKPRPAPVASSIMSDSSATPAGEAEVAGRQKNAIN  300
 301 NNAPPKFDRTLTDIMNDELYHPDLVITTSAPAPQQTLTTSNNNFNKVVETANQHLSAMQS  360
 361 PASSNSSPFRQGSPHSATLHDFSSLNMASPQVRLGSAQQMRENSKAVQDAAWQQSLARHN  420
 421 QDMTPKTISPKDALLDYHEPEGESNFPLFPQPDNHGFNSDAMSKALSHQSLDGLPNLGDM  480
 481 STFNFNFSPSNLDSMPTFNGLQQLPQTLQQYSFVNQPRQPSTVPSLATSRMSSAETGITD  540
 541 SPRSNAVQRPVDTRAEGGTYTCTYHGCPLRFDTPQLLQKHKREGHRQAHGLNSRQPNGMT  600
 601 STRVDTQAGPHRCERINPSTGKPCNQIFSRPYDLTRHEDTIHNARKKKVRCEICTDEKTF  660
 661 SRADALTRHFRVCHPDVPFNGGKQRKARAGRSG
Interface Residues: 572, 573, 575, 576, 578, 579, 583, 594, 597, 602, 603, 606, 630, 631, 632, 633, 635, 636, 662, 663, 664, 665, 667, 668
3D-footprint Homologues: 1tf3_A, 1tf6_A, 2jpa_A, 2gli_A, 2wbs_A, 1f2i_J, 2drp_D, 4x9j_A, 5v3j_F, 6u9q_A, 1llm_D
Binding Motifs: M0467_1.02 gGTGGCGa
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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