Transcription Factor
| Accessions: | T100269_1.02 (CISBP 1.02) |
| Names: | Prep, T100269_1.02; |
| Organisms: | Oikopleura dioica |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 214 |
| Pfam Domains: | 172-211 Homeobox KN domain 174-211 Homeobox domain |
| Sequence: (in bold interface residues) | 1 VQKFARRLMEQGRAIYTNDGELDSLMVKALQVLKIHLIELEKVGDLSNDFCRRYIHCLKG 60 61 KMQSENLLRSPDSVDSSDDPCDLGVQMVHPISRPNTAQYALESTHLGHQLPPHPYAAYEA 120 121 FPRPNAPVLPSNHPHGHPQNHNMSGLYDNFDADNRLKRGLLPRQATDTLRGWLFQHLVHP 180 181 YPSEDEKRNLAQQTGLTLLQVNNWFINARRRILQ |
| Interface Residues: | 155, 157, 158, 202, 203, 206, 207, 208, 210, 211 |
| 3D-footprint Homologues: | 6fqp_B, 1puf_B, 1le8_A, 4xrm_B, 6a8r_A, 2d5v_B, 4xrs_G, 1le8_B, 3cmy_A, 1fjl_B, 5hod_A, 1mnm_C, 6fqq_E, 3lnq_A, 1k61_B, 5zfz_A |
| Binding Motifs: | M1150_1.02 scTGTCAh |
| Related annotations: | PaperBLAST |
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