Transcription Factor
| Accessions: | T102481_1.02 (CISBP 1.02) |
| Names: | EAT80686.1, T102481_1.02; |
| Organisms: | Phaeosphaeria nodorum |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 870 |
| Pfam Domains: | 182-228 Homeobox domain 194-226 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 MASHAFDDLDAFFDFDQLEHDHGIRTVTTPCQQHDDPSVHPGQVLSMDWVADAPHVLASP 60 61 DFHTHNFIQKASYPQTCSYEIRHDGDAGTYPLPRPDYEDASASQDATSDQNPRPYIAPSS 120 121 SSQMHSPGLGSPGRDIAADLHDEKDLVLHPTPTAIPLRQASTASWKPASAKRKGAQSRIP 180 181 LEARQILEDEFAANPYPCSWEIDIIAHQANLDVKKVRNWFNNTRARKKGGDVDTLQQEHV 240 241 DAVGCLLGARLSRDSLGALEQQGAEDVQPPQPLAVYLAQSYQEEAVQLPDVQAALETDTL 300 301 SGSADFHDAWLGMPRGRTGSIITSVDSSDGTAPTSFTVSSSGSRSNISSFGRDRRRGRRR 360 361 MAWKESPHNNRAKFNGVNSSGEPQKDLAFFCTFCPRAFKTKYEWVRHEDSVHALRTTWIC 420 421 CDTKAPFLQTCPFCGHMHPDDAHMAGHKYQQCSNKPESQRTFYRRDHFIQHLHHIHFANA 480 481 KHPSVRVGCQARLMATEGHNFGCKDLAMRWRRFGAPMKRDDPMLHCGMCGKRSKDWSERC 540 541 EHVAQHLVAREHDRSAWWPERKENHLENLYSASPFESFRCRYCLKVFTDVKEMNAHSHCK 600 601 VWSCRFLRTFDDVTANNAGPPLCSDFPSAKAHHCHLCGAGYRTPHAEHAQNYHRHRSCNQ 660 661 EFYTSEDAFLAHLHNFHNALHPALLHGSSVIEQNFLRNKGASFEPVEFNESWQPCLMDLD 720 721 DAPIGFAVDKASTPPSIAKKGNGHIKKPTPVRQKIRHDLQRSPIATIKAQRQRSETNTSG 780 781 SDSHSPRFLRLSTFVPFWSSRIFYSRSNRPYLVPKDNTTVLEEIQKPHVASLVMSSGLVG 840 841 MALTRWLIKPQHCSLSGMTELIISEDNRES |
| Interface Residues: | 157, 161, 172, 173, 175, 176, 177, 178, 214, 215, 217, 218, 221, 222, 225, 226, 400, 402, 403, 406, 439, 440, 442, 443, 464, 465, 466, 467, 470 |
| 3D-footprint Homologues: | 2xsd_C, 3d1n_M, 6fqp_B, 1au7_A, 6m3d_C, 3l1p_A, 2ld5_A, 1mnm_C, 1fjl_B, 1k61_B, 7psx_B, 5hod_A, 3cmy_A, 5jlw_D, 1le8_A, 1e3o_C, 7xrc_C, 6fqq_E, 4xrm_B, 2lkx_A, 8g87_X, 5zfz_A, 1puf_B, 2r5y_A, 5zjt_E, 4cyc_A, 2hos_A, 5ei9_F |
| Binding Motifs: | M1212_1.02 acTAATCAwtt |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.