Transcription Factor

						

			
Accessions: T084993_1.02 (CISBP 1.02)

			
Names: srp, T084993_1.02;
Organisms: Drosophila melanogaster
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:B1H, family:GATA
Length: 731
Pfam Domains:   216-249 GATA zinc finger
  270-303 GATA zinc finger
Sequence: 
(in bold interface residues)		   1 MQSPNQTQAHLQQQHHQQQQQQHQQHQQQQLQQQQQQHHHNQHQHHNSSSSSPGPAGLHH   60
  61 SSSSAATAAAVAAATAAVNGHNSSLEDGYGSPRSSHSGGGGGGTLPAFQRIAYPNSGSVE  120
 121 RYAPITNYRGQNDTWFDPLSYATSSSGQAQLGVGVGAGVVSNVIRNGRAISAANAAAAAA  180
 181 ADGTTGRVDPGTFLSASASLSATLFDADYFTEGRECVNCGAISTPLWRRDNTGHYLCNAC  240
 241 GLYMKMNGMNRPLIKQPRRLSASKRAGLSCSNCHTTHTSLWRRNPAGEPVCNACGLYYKL  300
 301 HSVPRPLTMKKDTIQKRKRKPKGTKSEKSKSKSKNALNAIMESGSLVTNCHNVGVVLDSS  360
 361 QMDVNDDMKPQLDLKPYNSYSSQPQQQLPQYQQQQQLLMADQHSSAASSPHSMGSTSLSP  420
 421 SAMSHQHQTHPHQQQQQQLCSGLDMSPNSNYQMSPLNMQQHQQQQSCSMQHSPSTPTSIF  480
 481 NTPSPTHQLHNNNNNNNNSSIFNNNNNNNSSSNENNNKLIQKYLQAQQLSSSSNSGSTSD  540
 541 HQLLAQLLPNSITAAAAAAAAAAAAAIKTEALSLTSQANCSTASAGLMVTSTPTTASSTL  600
 601 SSLSHSNIISLQNPYHQAGMTLCKPTRPSPPYYLTPEEDEQPALIKMEEMDQSQQQQQQQ  660
 661 QHQQQQHGEIMLSRSASLDEHYELAAFQRHQQQQQQLQQQTAALLGQHEQHVTNYAMHKF  720
 721 GVDRETVVKME
Interface Residues: 225, 226, 228, 238, 242, 279, 280, 282, 292, 296, 297, 300, 317, 319, 320
3D-footprint Homologues: 4hc9_A, 3vd6_C, 1gat_A, 3dfx_B, 4gat_A
Binding Motifs: M5213_1.02 vKCwRbCSWKAv
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.