Transcription Factor

						

			
Accessions: T049025_1.02 (CISBP 1.02)

			
Names: Sp1, T049025_1.02;
Organisms: Mus musculus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 781
Pfam Domains:   624-648 C2H2-type zinc finger
  624-648 Zinc finger, C2H2 type
  640-667 Zinc-finger double domain
  654-678 Zinc finger, C2H2 type
  656-678 C2H2-type zinc finger
  671-693 Zinc-finger double domain
  684-706 Zinc finger, C2H2 type
  684-706 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MSDQDHSMDEVTAVVKIEKDVGGNNGGSGNGGGAAFSQTRSSSTGSSSSSGGGGGQESQP   60
  61 SPLALLAATCSRIESPNENSNNSQGPSQSGGTGELDLTAAQLSQGANGWQIISSSSGATP  120
 121 TSKEQSGNSTNGSESSKNRTVSGGQYVVAATPNLQNQQVLTGLPGVMPNIQYQVIPQFQT  180
 181 VDGQQLQFAATGAQVQQDGSGQIQIIPGANQQIIPNRGSGGNIIAAMPNLLQQAVPLQGL  240
 241 ANNVLSGQTQYVTNVPVALNGNITLLPVNSVSAATLTPSSQAGTISSSGSQESSSQPVTS  300
 301 GTAISSASLVSSQASSSSFFTNANSYSTTTTTSNMGIMNFTSSGSSGTSSQGQTPQRVGG  360
 361 LQGSDSLNIQQNQTSGGSLQGSQQKEGEQSQQTQQQQILIQPQLVQGGQALQALQAAPLS  420
 421 GQTFTTQAISQETLQNLQLQAVQNSGPIIIRTPTVGPNGQVSWQTLQLQNLQVQNPQAQT  480
 481 ITLAPMQGVSLGQTSSSNTTLTPIASAASIPAGTVTVNAAQLSSMPGLQTINLSALGTSG  540
 541 IQVHQLPGLPLAIANTPGDHGTQLGLHGSGGDGIHDETAGGEGENSSDLQPQAGRRTRRE  600
 601 ACTCPYCKDSEGRASGDPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGERPFMCNWSY  660
 661 CGKRFTRSDELQRHKRTHTGEKKFACPECPKRFMRSDHLSKHIKTHQNKKGGPGVALSVG  720
 721 TLPLDSGAGSEGTATPSALITTNMVAMEAICPEGIARLANSGINVMQVTELQSINISGNG  780
 781 F
Interface Residues: 409, 425, 426, 427, 428, 430, 431, 608, 613, 614, 615, 617, 629, 631, 633, 636, 637, 638, 639, 640, 642, 643, 645, 646, 649, 665, 666, 667, 668, 669, 670, 672, 673, 674, 677, 694, 695, 696, 697, 698, 699, 700, 701, 702, 705
3D-footprint Homologues: 8bx1_A, 7ysf_A, 5yel_A, 1ubd_C, 7n5w_A, 8h9h_G, 6jnm_A, 6ml4_A, 7y3l_A, 1tf3_A, 8cuc_F, 5kl3_A, 1tf6_A, 8gn3_A, 5ei9_F, 1g2f_F, 6blw_A, 5k5i_A, 2kmk_A, 6u9q_A, 8ssq_A, 5kkq_D, 4x9j_A, 2gli_A, 8ssu_A, 5v3j_F, 6e94_A, 2lt7_A, 7y3m_I, 6a57_A, 2jpa_A, 7w1m_H, 3uk3_C, 2wbs_A, 7txc_E, 1llm_D, 2drp_D, 1f2i_J, 4m9v_C, 5yj3_D
Binding Motifs: M0392_1.02 gKGGGCGkg
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.