Transcription Factor
| Accessions: | A0A3Q7EM19 (JASPAR 2024) |
| Names: | A0A3Q7EM19_SOLLC |
| Organisms: | Solanum lycopersicum |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 331 |
| Pfam Domains: | 68-112 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MVSVYPTPPGQDFHYMGDPMKTGLMGLHPVQSGTSIHGNLNLDSNTGLVVSDDHSKKTRK 60 61 PYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSG 120 121 TSEHVPPPRPKRKASHPYPQKAPKKVISQVGSIQFQPPGALPVPGFGIGPDPLSVPGNTI 180 181 NFSPWTYDNVPAISTIQTRKDDAQLSSGGVKQNCSSSSNENNPRINKTKESNDQNESQKQ 240 241 MKVMPDFAQVYSFIGSVFDPSTRDHLQRLKKMDPIDIQTALMLMKNLSFNLSSPEFEDHR 300 301 RMLSSYGLGAEKDKMDLPIKSDFRGNAIRAI |
| Interface Residues: | 68, 103, 106, 107, 110, 111 |
| 3D-footprint Homologues: | 6j5b_C, 7d3t_D, 3osg_A |
| Binding Motifs: | MA1812.1 wwyAGGCCCAAwwww MA1812.2 AGGCCCAAw |
| Binding Sites: | MA1812.1.1 MA1812.1.10 / MA1812.1.15 MA1812.1.11 / MA1812.1.16 MA1812.1.12 / MA1812.1.17 MA1812.1.13 / MA1812.1.20 MA1812.1.14 MA1812.1.15 MA1812.1.16 MA1812.1.17 MA1812.1.18 MA1812.1.19 MA1812.1.2 MA1812.1.20 MA1812.1.3 MA1812.1.4 / MA1812.1.6 MA1812.1.5 / MA1812.1.7 MA1812.1.6 / MA1812.1.9 MA1812.1.10 / MA1812.1.7 MA1812.1.11 / MA1812.1.8 MA1812.1.13 / MA1812.1.9 MA1812.1.12 MA1812.1.14 MA1812.1.18 MA1812.1.19 MA1812.1.4 MA1812.1.5 MA1812.1.8 MA1812.2.1 / MA1812.2.13 MA1812.2.10 MA1812.2.11 / MA1812.2.14 MA1812.2.12 / MA1812.2.15 / MA1812.2.18 / MA1812.2.3 MA1812.2.16 / MA1812.2.17 MA1812.2.19 MA1812.2.2 MA1812.2.20 MA1812.2.4 MA1812.2.5 MA1812.2.6 MA1812.2.7 MA1812.2.8 MA1812.2.9 |
| Publications: | Kalifa Y., Gilad A., Konrad Z., Zaccai M., Scolnik P. A., Bar-Zvi D. The water- and salt-stress-regulated Asr1 (abscisic acid stress ripening) gene encodes a zinc-dependent DNA-binding protein.. Biochem. J. 381:373-378 (2004). [Pubmed] |
| Related annotations: | PaperBLAST |
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