Transcription Factor
Accessions: | A8XI59 (JASPAR 2024) |
Names: | A8XI59_CAEBR |
Organisms: | Caenorhabditis briggsae |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | A8XI59 |
Length: | 405 |
Pfam Domains: | 288-321 GATA zinc finger |
Sequence: (in bold interface residues) | 1 MTSEEQDEVLEEKQKFEKTVKVEPEPKEEIGVESNGSSAVAATAEPAGPCAGCVQLHQEI 60 61 RQDVKKIMNKIETVCERLEVMLAEKERMNQEQMSESGSEEKYAGSPSGSRESPAFQTNGK 120 121 MLSAVMGNGGSRKRKPTKESVNRLFENSLIHENGNGSTIEKVPRQVSTPVSASSPFADFN 180 181 HFNGGLMFDPMPNPQNMMQFLNLVQQQQHHQQAQQAAQIIQKEAQKVKEDVKQKPLEISN 240 241 SPPNPSPNEQDLLSQLASQFNGKSPSPSVVHAAGSPEDDSSNSGGSRCSNCSTTKTTAWR 300 301 RDLAGKLVCNACGLYYRLHRTHRPVHMRKDFIQQRFRRKIKEDENPAISQEAVFSQLLGM 360 361 PPGGAAYSLMEHLNQLSQVQEESAKPSTGRTTESSKPDTGTTTPK |
Interface Residues: | 297, 298, 300, 310, 314, 315, 318, 335, 337, 338, 366, 386 |
3D-footprint Homologues: | 1gat_A, 3dfx_B, 4gat_A, 3vd6_C, 8dvp_A |
Binding Motifs: | MA1439.1 sTGATAAs MA1439.2 TGATAA |
Publications: | Budovskaya Y.V, Wu K, Southworth L.K, Jiang M, Tedesco P, Johnson T.E, Kim S.K. An elt-3/elt-5/elt-6 GATA transcription circuit guides aging in C. elegans. Cell 134:291-303 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.