Transcription Factor
| Accessions: | T099471_1.02 (CISBP 1.02) |
| Names: | FBpp0292044, T099471_1.02; |
| Organisms: | Drosophila melanogaster |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 1291 |
| Pfam Domains: | 1108-1154 Pou domain - N-terminal to homeobox domain 1161-1199 Pou domain - N-terminal to homeobox domain 1225-1280 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MAEGCEDSAGAAESTTSQSQYTTLDKMLGTVLPCEAAIGATPGGGSSSGNSSSNIGGNTT 60 61 NSSNNGSNIVKREFCDGSLMPGAGASVNNNNANAANNNNNNSSSSNNNNNNNNTKMQAMI 120 121 CNKSSSTNNSSSSSSSSSSCSSSSSSSSSATSTLTSCTTAAVVPSNCSTNANKSPVSPYS 180 181 QSLGMAIGIGAGAGSSPLREASPLPSSRSPLNAIASTIAAKSPCSGAAPASPPSASSNSS 240 241 SHVLALNIKTESDFDKEISCHKIHSPSSSSHAHSLHHHHHHHHHPHHSSRSNNNDDEMEI 300 301 TDGHALLSPPPPSHSHSHSPFDSKDHVKELEFYKNLAAKAASLANQHSPPPMPLPLPLPM 360 361 QIDGEEDENEGEGEGEGEAEEQSAEVMRLRREEQAQAKAFAAHLNGTMQDMINLQKLQNL 420 421 ATLQQQQQQQQQHPHPHHGHQHHHHHPATAAALASLQGLAASVFNSPLNLSVGGEPVATT 480 481 GPSVAPTSPTHNGGKSKTAKGGSSGNGSGGSSANSGTSSAQQQQQPDNPSSSSSPHHPLS 540 541 ASSLANVLAAATASPPPSLQAPPASAQMPQLILASGQLVQGVQGAQLLIPTAQGIAVQTI 600 601 LTIPVSPQIPTTEQFLPNAFGAFASYQQQQQQQQQQRDLLPPSLAALQHATALPQLAQTP 660 661 TNLLKPNLFSTGVQQLLTALHPELFAAAAATHQQQQQQQQQQVQQQRERERERERERERE 720 721 REREREQHLGIGHLPHSHLAADLRRSAERSPTAGSPTGGSPGLAAKGPQPPPPGAAFLLQ 780 781 QQLHIKPETQTHLHHHLQTQSTSAVSSTLPQISLRHPDELTAPQMDLKPLELSASTSPPA 840 841 PPPRHHFGHSLRGSSTVSPKHSPQGRMGGSGGSTTTGMNLSQHHERHDRLERLERQERHE 900 901 RRSHTPTATATRASVSSSSSAGHHGGSLPSGRLSPPSSAPSNSAANSISDRGYTSPLFRT 960 961 HSPQGHALSLGGSPRLERDYLGNGPSSGTATSTSSCGAPTAAGSSATANVLSSINRLNAS 1020 1021 NGELTITKSLGAPTATATRASSASPRDDSPGPGPSTSSVSHMQPLKLSPSSRSEPPHLSP 1080 1081 NGNDNDNDLLMDSPNEPTINQATTNVVDGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQAL 1140 1141 SVTEGPAYSQSAICSALAAQMYAAQLSTQQQNMFEKLDITPKSAQKIKPVLERWMKEAEE 1200 1201 SHWNRYKSGQNHLTDYIGVEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQ 1260 1261 LGYEREVIRIWFCNKRQALKNTVRMMSKGMV |
| Interface Residues: | 1133, 1149, 1150, 1151, 1152, 1154, 1155, 1170, 1171, 1172, 1173, 1175, 1176, 1179, 1183, 1225, 1226, 1227, 1228, 1266, 1269, 1270, 1273, 1274, 1276, 1277, 1278, 1279, 1281 |
| 3D-footprint Homologues: | 8bx1_A, 7u0g_M, 3d1n_M, 1e3o_C, 1au7_A, 2xsd_C, 1o4x_A, 7xrc_C, 8g87_X, 2d5v_B, 1puf_A, 5zfz_A, 1fjl_B, 8ejp_B, 5zjt_E, 3cmy_A, 1ig7_A, 6a8r_A, 8pmf_A, 6m3d_C, 3lnq_A, 1nk2_P, 1zq3_P, 2lkx_A, 1jgg_B, 7q3o_C, 4cyc_A, 5jlw_D, 2r5y_A, 9b8u_A, 2hdd_A, 8ik5_C, 4xrs_G, 1puf_B, 3rkq_B, 2hos_A, 8osb_E, 1b72_A, 5hod_A, 8eml_B, 1le8_A, 4qtr_D, 1du0_A |
| Binding Motifs: | M1105_1.02 CTAATTAt |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.