Transcription Factor

						

			
Accessions: T060516_1.02 (CISBP 1.02)

			
Names: rn, T060516_1.02;
Organisms: Drosophila melanogaster
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:B1H, family:C2H2 ZF
Length: 946
Pfam Domains:   488-506 C2H2-type zinc finger
  488-510 Zinc finger, C2H2 type
  503-528 Zinc-finger double domain
  517-535 C2H2-type zinc finger
  517-539 Zinc finger, C2H2 type
  532-555 Zinc-finger double domain
  545-567 C2H2-type zinc finger
  545-567 Zinc finger, C2H2 type
  559-585 Zinc-finger double domain
  634-656 Zinc finger, C2H2 type
  634-656 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MIMHGTWYKGPQLAHHPHSNPHNSSHGHSDYHQFRSYPSFVVTPYHDGHVQGPATPTPCT   60
  61 APPTPCNGPVPVSVPVSIPVCHTGGQGSPVIVESSFAIAAAAAAAAAAVAVGGSSATPLL  120
 121 PSPPIKIEQVFGEPSSLGAVVEDYALGLDCPVEHTFRKPHNNNGYSWSTGNNNEVVSHSS  180
 181 NGHTNNHPTTPPTPPNEASATQATSVSAINLNQAQPASQTRSNFGSSIKSPPSEPDAVTA  240
 241 ATCKSQENNSGQNPTPNSLSDHNPAHNLNSNSTAAAVAAAAAAAAAANMPIGGVQGQNPT  300
 301 QGLVHWMSAVMAEHMTGQTHHDPGAVGMHYMWNGNVDHAKDISDYNLWPPTPRSHQHASE  360
 361 HHPMSLKQEYEAKMNDHHHNNLQKGHFLDDNRLEHHAVTGQGGLGLGASNGVGGGGGGAS  420
 421 VVGNSSLGASSHHAVAAAHHHNQAVAAASAAALLVVPQPINASKMGGPGGVSSVAGGHAT  480
 481 GGGSGRKYQCKMCPQIFSSKADLQLHTQIHMREAKPYKCTQCSKAFANSSYLSQHTRIHL  540
 541 GIKPYRCEICQRKFTQLSHLQQHIRTHTGDKPYKCRHPGCQKAFSQLSNLQSHSRCHQTD  600
 601 KPFKCNSCYKCFSDEPSLLEHIPKHKESKHLKTHICQYCGKSYTQETYLTKHMQKHAERT  660
 661 DKRPPIVPGSAAAIAAAAAAAAGGSANPANGPPPPPNPAQHQRNNLGLPPVSIAPSDNGY  720
 721 WPKVSPDSAAAANAMEVMHQQQQQQQQQQQQQQQQQQQQQQQAHHHHPQHGVPPQQHVPP  780
 781 QQQQQQQQQQQHHHPQQQPPPQHSMEAHYAQPTAPNGSQSNGHGAELQPHHRMPDPVRED  840
 841 IASTPSAVGPYDAASITKTTSNSAFTPINSMPPHLNSLSHHPMAQRPYLYDAISFPNKNV  900
 901 NQNNANAFPNQLISLHQIRNYAHQPAGLMAGEHLLGVSVGPGKDKG
Interface Residues: 499, 501, 502, 504, 505, 506, 507, 508, 509, 511, 517, 527, 528, 529, 530, 531, 534, 535, 538, 555, 556, 557, 558, 559, 560, 561, 562, 563, 566, 585, 586, 587, 588, 589, 590, 591, 592, 613, 614, 615, 616, 617, 619, 620, 624, 627, 628, 629, 630, 645, 646, 647, 648, 651
3D-footprint Homologues: 5k5l_F, 8ssu_A, 5v3j_F, 5yel_A, 8ssq_A, 7w1m_H, 5und_A, 2lt7_A, 6e94_A, 7ysf_A, 2jpa_A, 1ubd_C, 2i13_A, 2kmk_A, 7y3l_A, 7n5w_A, 3uk3_C, 6jnm_A, 8cuc_F, 1g2f_F, 4x9j_A, 8gn3_A, 5kkq_D, 6u9q_A, 5ei9_F, 1mey_C, 7txc_E, 5kl3_A, 1f2i_J, 6wmi_A, 5k5i_A, 2gli_A, 7eyi_G, 8h9h_G, 4m9v_C, 7y3m_I, 6a57_A, 1tf3_A, 1tf6_A, 6ml4_A, 1llm_D, 6blw_A, 2drp_D, 5yj3_D, 2wbs_A
Binding Motifs: M5168_1.02 mrrhsmAAAAAAAcrmdchrAdcrC
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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