Transcription Factor
| Accessions: | UP00270A (UniPROBE 20160601) |
| Names: | "MSS1, Nrg1, Transcriptional regulator NRG1, YD5112.01C, YDR043C, Zinc finger protein MSS1" |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q03125 |
| Description: | Transcriptional repressor that recruits the Cyc8p-Tup1p complex to promoters; mediates glucose repression and negatively regulates a variety of processes including filamentous growth and alkaline p... |
| Length: | 108 |
| Pfam Domains: | 51-73 Zinc finger, C2H2 type 51-69 C2H2-type zinc finger 65-91 Zinc-finger double domain 79-103 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 SIIQQPENGIVSNDAYNKMANSRYSLKTRKQRTDPRNTLSDEEDLEQRRKYICKICARGF 60 61 TTSGHLARHNRIHTGEKNHCCPYKGCTQRFSRHDNCLQHYRTHLKKGQ |
| Interface Residues: | 39, 41, 42, 45, 61, 62, 63, 64, 65, 67, 68, 69, 72, 91, 92, 93, 94, 95, 97, 98, 99, 100, 102 |
| 3D-footprint Homologues: | 5kl3_A, 2jpa_A, 1g2f_F, 7ysf_A, 7w1m_H, 6jnm_A, 8cuc_F, 7y3l_A, 6ml4_A, 3uk3_C, 7n5w_A, 2kmk_A, 7txc_E, 6e94_A, 5kkq_D, 6wmi_A, 5yj3_D, 4x9j_A, 2i13_A, 8ssq_A, 1llm_D, 1ubd_C, 5ei9_F, 8ssu_A, 1mey_C, 5und_A, 2drp_D, 8gn3_A, 1f2i_J, 6blw_A, 5k5i_A, 6u9q_A, 2gli_A, 7eyi_G, 5v3j_F, 4m9v_C, 8h9h_G, 2lt7_A, 1tf6_A, 1tf3_A, 7y3m_I, 6a57_A, 2wbs_A |
| Binding Motifs: | UP00270A_1 ytvrrymAGGGTCCwwbgcw |
| Binding Sites: | AAGGGTCC AAGGGTCT AGACCCTG AGGACCCT AGGGGTCC AGGGTCCA AGGGTCCC AGGGTCCG AGGGTCTA CAGGGACC CAGGGTCC CAGGGTTC GACCCTGA GGACCCTA GGGGTCCA AAGACCCT AAGGGACC AAGGGTTC AGGGCCCT AGGGTCTC |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.