Transcription Factor

						

			
Accessions: T107847_1.02 (CISBP 1.02)

			
Names: irf6.2, T107847_1.02;
Organisms: Xenopus (Silurana) tropicalis
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:IRF
Length: 460
Pfam Domains:     7-115 Interferon regulatory factor transcription factor
  214-398 Interferon-regulatory factor 3
Sequence: 
(in bold interface residues)		   1 MALQPRRVRLKPWLVAQVDSGMYPGLIWLNREAKRFQIPWKHATRHSPQQEEENTIFKAW   60
  61 AVETSKYQEGADEPDPAKWKAQLRCALNKSREFKLMYDGTKEVPMNPVKIYEVCDIPQSQ  120
 121 GSIINPGSAGSAPWDDDDFEESELNKSQNHVPIQEPFNCLNISADSPMGSTSTGSCTPEQ  180
 181 TWPKTEPQEMEVPPAAGPADFFSSPEMWISSLPMTDLEIQFYYRGKEMGQATTVSNPQGC  240
 241 RLFYGDLGPMPNQEELFGPITLEQVRFPGTEQIVNEKQKLFTSRLLDVMDRGLILEVSGH  300
 301 AIYAIRLCQCKVYWNGPCSPSQTTPNLIERQKRVKLFCLETFLSELISHQKGVVTKQPPY  360
 361 EIYLCFGEEWPDGKSKERKLIIVQIIPIVARMILEMFSGDSTRSFDSGSIRLQISVPDIK  420
 421 DNIVAHLKQLYRLLQNHQGPDAWPLMQPQNMHLAQTLQAQ
Interface Residues: 42, 44, 77, 81, 82, 84, 85, 86, 88, 89
3D-footprint Homologues: 2o61_A, 8hcm_A, 2pi0_B, 1if1_B, 2irf_L, 8hcl_A, 7oot_B
Binding Motifs: M1272_1.02 raycGAwACy
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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