Transcription Factor
| Accessions: | T061407_1.02 (CISBP 1.02) |
| Names: | T061407_1.02;, ztf-16 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 480 |
| Pfam Domains: | 133-155 C2H2-type zinc finger 133-155 Zinc finger, C2H2 type 150-170 Zinc-finger double domain 161-183 C2H2-type zinc finger 190-215 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MDELNACTECGFTTTVFSEFQGHIEKHENEHSRSSSGEMSNSQTIEWGDGIQSSTPSPRS 60 61 TPPSDPTPSPDSDEHLEHHISITEITNTLIKKEPGTKGQKTVHVCPHCNFTTCMSQHMKS 120 121 HLEAHERHQGQMYQCDICKMQFSQKANMHRHRMRHSGVKPYECRFCKKRFFRKDQMQEHS 180 181 MTHIKTGFGFDCPVSQCNMQFSQHNALRAHLEETHTISSTNPASCKRCNLMFANSRRLLL 240 241 HFQTRHDDSESSPKKENTPKRKKLSNGNALPMDPANMSITEQLQRMVKSEFSPPNTDTSD 300 301 NSTSSEFDKIPPSFPMANPDILLMCLNQMNQFNGFGENIPRPMLNIPNIPLPALHNIPAV 360 361 AAIVKQDQVQLWSEQTSSSVSVSAPSPSEQSHSPPANESSLSLTEKEKSPTPEKEDEENV 420 421 ECCHCGMMFYDNTMYLLHKSLHSDGDPFKCALCGTQCGEKYMFTTHVIFADHSTQATTSA 480 |
| Interface Residues: | 112, 114, 115, 116, 117, 119, 120, 121, 123, 124, 126, 127, 129, 133, 143, 144, 145, 146, 147, 149, 150, 151, 154, 162, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 182, 202, 203, 204, 205, 206, 207, 208, 209, 212, 213, 233, 234, 235, 236, 237, 240, 430, 433, 434, 461, 463, 464 |
| 3D-footprint Homologues: | 7ysf_A, 6ml4_A, 8ssq_A, 7w1m_H, 5k5l_F, 5yel_A, 8ssu_A, 5kkq_D, 2gli_A, 6blw_A, 1g2f_F, 1ubd_C, 2jpa_A, 2kmk_A, 3uk3_C, 1tf3_A, 8cuc_F, 7y3l_A, 7n5w_A, 2drp_D, 7txc_E, 5k5i_A, 5v3j_F, 1f2i_J, 1tf6_A, 6u9q_A, 4x9j_A, 2wbs_A, 8gn3_A, 5ei9_F, 1llm_D, 5kl3_A, 8h9h_G, 4m9v_C, 2lt7_A, 6e94_A, 7y3m_I, 2hap_D, 5yj3_D, 6jnm_A, 6a57_A |
| Binding Motifs: | M0487_1.02 wtychGGAwk |
| Related annotations: | PaperBLAST |
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