Transcription Factor
| Accessions: | Q4JF70 (JASPAR 2024) |
| Names: | Q4JF70_CIOIN |
| Organisms: | Ciona intestinalis |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q4JF70 |
| Length: | 803 |
| Pfam Domains: | 125-308 T-box |
| Sequence: (in bold interface residues) | 1 MCLTDSEDQTRSSSPLEHHFNLPTPMIQDSMKPGPISPLQAVMSAYNHSGMMPSRPGSDL 60 61 PFFPPSYLPSLSMAHCAPSLMFPKGANSIAGLGSAFERSLCGAQGHDLPQGKLPDPDDNE 120 121 PDDPQVDLDNMELWEQFHRRGTEMVITKTGRRMFPSFKVKVSGLSKTAKYIMLMDIVSAD 180 181 DCRYKFHNSRWMVAGKADPELPKRMYIHPDSPATGEQWMNRPGVSFHKLKLTNNIADPHG 240 241 HTILNSMHKYQPRFHVVRCGDLAKLPYCAFRTYVFKEMQFIAVTAYQNEKITQLKIDHNP 300 301 FAKGFRDSGSGKREKRQHFHLQQQMVSNHKEAASNPTRQTSVYSNSERSECNVSTDDDTR 360 361 PNNSGGSTSSVTSPTRLEKRATDYSETIIGESSSKKSRTSITEDDNMSNDEKSKNEVFRR 420 421 ETLTSPLKKTPEAASHRRSPHSPIKPRVKDSPVTSSSTLTSPIPIHPGLTGLGGYPNAFM 480 481 PHLSGAAAAAYPFLHPSQMSALTAAMSAGGASNPYSHLGSAFNPALLQAVVNAGGMSSLH 540 541 RPSAQNPGSQLLAGLGAPSTSQPFSSLFTNSPPLSAFNPYANFFPYGSAAAAAALGFPSP 600 601 AAGASSSSLPGGRVDGSSGRPMSPMSLANRLYRQSNHQQHSFNKSFTDPSSPPLHIPGVL 660 661 PSSSPRVGTSYSNSAKNSRFSPYAMPFFGFHPFRSGPGTESSENRFDFSHHPRPQPSESS 720 721 EPSQRRRSGSGSPISSSSSPAPRVRTISESSDGMKPEPCRRSSNAYPSPTIGTAVQELRN 780 781 MENLVSGLDKTRRHSEELRVNKA |
| Interface Residues: | 151, 284, 285, 301, 304, 305 |
| 3D-footprint Homologues: | 1xbr_B, 6f59_B, 2x6v_A, 4a04_B, 1h6f_B, 5flv_I |
| Binding Motifs: | MA1922.1 raarrAgGTGTgAwwtmmmm MA1922.2 AgGTGTgA |
| Publications: | Kugler JE, Gazdoiu S, Oda-Ishii I, Passamaneck YJ, Erives AJ, Di Gregorio A. Temporal regulation of the muscle gene cascade by Macho1 and Tbx6 transcription factors in Ciona intestinalis. J Cell Sci : (2010). [Pubmed] |
| Related annotations: | PaperBLAST |
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