Transcription Factor
| Accessions: | T04350 (AthalianaCistrome v4_May2016), Q39013 (JASPAR 2024) |
| Names: | AT1G01720, ATAF1, T04350;, ANAC002, NAC domain-containing protein 2, NAC2_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:NAC |
| Length: | 289 |
| Pfam Domains: | 7-131 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MSELLQLPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKYDPWELPGLALYGE 60 61 KEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPIGLPKPVGIKKALVFYAGKAPKGE 120 121 KTNWIMHEYRLADVDRSVRKKKNSLRLDDWVLCRIYNKKGATERRGPPPPVVYGDEIMEE 180 181 KPKVTEMVMPPPPQQTSEFAYFDTSDSVPKLHTTDSSCSEQVVSPEFTSEVQSEPKWKDW 240 241 SAVSNDNNNTLDFGFNYIDATVDNAFGGGGSSNQMFPLQDMFMYMQKPY |
| Interface Residues: | 73, 78, 80, 89, 91, 93, 112, 116, 117, 118, 121 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M0652 kaCGTrwwkraywygkmwwctt MA2015.1 wwyACGcAACTww MA2015.2 ACGcAACT |
| Binding Sites: | MA2015.2.10 MA2015.2.3 MA2015.2.14 / MA2015.2.15 MA2015.2.18 / MA2015.2.7 / MA2015.2.9 MA2015.2.1 MA2015.1.1 MA2015.1.7 MA2015.1.14 MA2015.1.19 MA2015.1.10 MA2015.1.11 MA2015.1.12 MA2015.1.13 MA2015.1.15 MA2015.1.16 MA2015.1.17 MA2015.1.18 MA2015.1.2 MA2015.1.20 MA2015.1.3 MA2015.1.4 MA2015.1.5 MA2015.1.6 MA2015.1.8 MA2015.1.9 MA2015.2.12 / MA2015.2.16 / MA2015.2.17 / MA2015.2.19 / MA2015.2.2 MA2015.2.11 MA2015.2.13 MA2015.2.20 MA2015.2.4 MA2015.2.5 MA2015.2.6 MA2015.2.8 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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