Transcription Factor
| Accessions: | T104712_1.02 (CISBP 1.02) |
| Names: | nasonia_NCBI_hmm302924, T104712_1.02; |
| Organisms: | Nasonia vitripennis |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain,POU |
| Length: | 649 |
| Pfam Domains: | 412-485 Pou domain - N-terminal to homeobox domain 508-564 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MSANPCEPMTDRPYGKLWIGDDVTCWRTEQSVKRERSSPLNACATTTTTLTPTPTTAGSG 60 61 ATTPAVTHPRLSPPALAPASTPDLRSPSALHVKHLRVSPDVRVKGVEAVEEACSWARKMV 120 121 FLEEPRMIFADMKFHATSTPTSYRAHHHHRKYRPQNNNDCTSKFESAFFHKIFHDADLHG 180 181 DVDGADLSGDDRSIASDVQDGNDVHLDHDSIDSDREALNLVTDVSQRNSSSGTSGSASSP 240 241 SSGVSSQLTGSQHAGNSSQAALAAQLVGQQLLMHGSLGALSPQEIQALASTLQQQQQSLQ 300 301 QQLQQFAMFQQANPAAGQLPAQAQFFLQNQGLLQSGGGYTQRSSHPHSQSMQVQQAVAQA 360 361 AQQLQALQKQQALQSSGGGGRNTVQQQRSPPPPGTPPAVKPSAARLEPSPEETTDLEELE 420 421 QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKW 480 481 LEDADNSLNNPNSLSNPMTTPEAIGRRRKKRTSIETSVRVALEKAFVQNPKPTSEEITIL 540 541 ADSLAMEKEVVRVWFCNRRQKEKRINPPTAAMGSPTMASPAPSVFASLASTMSSSPLALT 600 601 THSSPALGGGQHPHSTPLGSPLPLALVAASGAGSGGYGHPHGAKSSVHE |
| Interface Residues: | 437, 453, 454, 455, 456, 458, 459, 465, 469, 508, 509, 510, 511, 549, 550, 552, 553, 556, 557, 560, 561, 564 |
| 3D-footprint Homologues: | 3d1n_M, 3l1p_A, 7u0g_M, 8g87_X, 2xsd_C, 1e3o_C, 1au7_A, 1o4x_A, 7xrc_C, 1ig7_A, 5zjt_E, 4cyc_A, 6a8r_A, 5jlw_D, 1fjl_B, 3cmy_A, 2h1k_B, 5zfz_A, 1puf_A, 1jgg_B, 1nk2_P, 1zq3_P, 3lnq_A, 2lkx_A, 1puf_B, 7q3o_C, 2ld5_A, 6es3_K, 7psx_B, 2hdd_A, 5hod_A, 3a01_E, 4xrs_G, 1b72_A, 3rkq_B, 2r5y_A, 1le8_A, 5flv_I, 1mnm_C, 1du0_A, 4qtr_D, 1k61_B |
| Binding Motifs: | M1228_1.02 twykmaTwwk |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.