Transcription Factor

						

			
Accessions: T07781 (AthalianaCistrome v4_May2016), Q940Y3 (JASPAR 2024)

			
Names: AT2G17410, T07781;, ARID domain-containing protein 3, ARID3_ARATH, AT-rich interactive domain-containing protein 3
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ecotype:Col-0, experiment type: DAP-seq, family:ARID
Length: 786
Pfam Domains:   493-581 ARID/BRIGHT DNA binding domain
Sequence: 
(in bold interface residues)		   1 MENLTEIESTMESLTEMESERVEQGTDKEIGSGEKRQDDVKETENENSGERVGEEAPVRE   60
  61 HEDSPCLIVIEEGTSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLI  120
 121 NPTAEDTVEENIVSSEVSSDILKDDGDAVEVDRDTAEVQEETANIPESKLSEDTGSPHHH  180
 181 ADILMVQEKAAEEHDMIASGDHEEFPVNPDNKHSEENQSPHHHANNVMEQDQAAEEREII  240
 241 SPGEHKEIPANPDTKVVEENNDRIDEGEANNLNLAGDGSGAVDHDYLTKTELDKVLEVPG  300
 301 SETISKLEDRPSEHLSETSMNVEKELEMPAVEILPDNDKNSDVLAVGVSGDSDNVVSVLP  360
 361 ASQTSSDRDEGMITVDAEPTEDMKLDVPDSKLVTDTTVDSTNNKDAHVEANTERQDNSSA  420
 421 LVLNDANNESAPVKRVPGPYVASSNIKSEARGSGDLNNGVHKIVRTPPVFDGTMRAKRSF  480
 481 LLDDASDGNESGTEEDQSAFMKELDSFFRERNMDFKPPKFYGEGLNCLKLWRAVTRLGGY  540
 541 DKVTGSKLWRQVGESFRPPKTCTTVSWTFRGFYEKALLEYERHKVSEGELQIPLPLELEP  600
 601 MNIDNQASGSGRARRDAASRAMQGWHSQRLNGNGEVSDPAIKDKNLVLHQKREKQIGTTP  660
 661 GLLKRKRAAEHGAKNAIHVSKSMLDVTVVDVGPPADWVKINVQRTQDCFEVYALVPGLVR  720
 721 EEVRVQSDPAGRLVISGEPENPMNPWGATPFKKVVSLPTRIDPHHTSAVVTLNGQLFVRV  780
 781 PLEQLE
Interface Residues: 550, 563, 564, 567, 568, 607
3D-footprint Homologues: 2oeh_A, 1kqq_A
Binding Motifs: M0147 AAwwtrAAATYAAwW
UN0388.1 AAwwtrAAATYAAwW
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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