Transcription Factor
| Accessions: | T127989_1.02 (CISBP 1.02), T23018 (AthalianaCistrome v4_May2016), Q84K00 (JASPAR 2024) |
| Names: | NAC2, T127989_1.02;, AT5G04410, T23018;, ANAC078, NAC domain-containing protein 78, NAC78_ARATH, Protein NTM1-like 11 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, AthalianaCistrome v4_May2016 2, JASPAR 2024 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:NAC/NAM, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 567 |
| Pfam Domains: | 9-136 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MGRGSVTSLAPGFRFHPTDEELVRYYLKRKVCNKPFKFDAISVTDIYKSEPWDLPDKSKL 60 61 KSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRNGSRVVGMKKTLVYHKGR 120 121 APRGERTNWVMHEYRLSDEDLKKAGVPQEAYVLCRIFQKSGTGPKNGEQYGAPYLEEEWE 180 181 EDGMTYVPAQDAFSEGLALNDDVYVDIDDIDEKPENLVVYDAVPILPNYCHGESSNNVES 240 241 GNYSDSGNYIQPGNNVVDSGGYFEQPIETFEEDRKPIIREGSIQPCSLFPEEQIGCGVQD 300 301 ENVVNLESSNNNVFVADTCYSDIPIDHNYLPDEPFMDPNNNLPLNDGLYLETNDLSCAQQ 360 361 DDFNFEDYLSFFDDEGLTFDDSLLMGPEDFLPNQEALDQKPAPKELEKEVAGGKEAVEEK 420 421 ESGEGSSSKQDTDFKDFDSAPKYPFLKKTSHMLGAIPTPSSFASQFQTKDAMRLHAAQSS 480 481 GSVHVTAGMMRISNMTLAADSGMGWSYDKNGNLNVVLSFGVVQQDDAMTASGSKTGITAT 540 541 RAMLVFMCLWVLLLSVSFKIVTMVSAR |
| Interface Residues: | 77, 82, 84, 93, 95, 97, 117, 121, 122, 123, 126 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M1404_1.02 tarCAmGccAva M0634 CTTGttsyvCAAGaAA M0651 CTTGttsyrCAAGaAAc MA1677.1 haCAAGAAAcmw MA1677.2 CAAGAAA |
| Binding Sites: | MA1677.2.11 / MA1677.2.19 MA1677.1.1 MA1677.1.10 / MA1677.1.8 MA1677.1.11 / MA1677.1.9 MA1677.1.11 / MA1677.1.12 MA1677.1.13 MA1677.1.12 / MA1677.1.14 MA1677.1.13 / MA1677.1.15 MA1677.1.14 / MA1677.1.16 MA1677.1.15 / MA1677.1.17 MA1677.1.16 / MA1677.1.18 MA1677.1.17 / MA1677.1.19 MA1677.1.2 MA1677.1.20 MA1677.1.2 / MA1677.1.3 MA1677.1.3 / MA1677.1.4 MA1677.1.5 MA1677.1.4 / MA1677.1.6 MA1677.1.5 / MA1677.1.7 MA1677.1.6 / MA1677.1.8 MA1677.1.7 / MA1677.1.9 MA1677.1.18 MA1677.1.19 MA1677.1.10 MA1677.1.20 MA1677.2.13 / MA1677.2.14 / MA1677.2.4 / MA1677.2.8 MA1677.2.17 / MA1677.2.2 MA1677.2.1 / MA1677.2.12 / MA1677.2.15 / MA1677.2.16 / MA1677.2.18 / MA1677.2.20 / MA1677.2.3 / MA1677.2.5 / MA1677.2.6 / MA1677.2.9 MA1677.2.10 MA1677.2.7 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.