Transcription Factor
| Accessions: | T127989_1.02 (CISBP 1.02), T23018 (AthalianaCistrome v4_May2016), Q84K00 (JASPAR 2024) |
| Names: | NAC2, T127989_1.02;, AT5G04410, T23018;, ANAC078, NAC domain-containing protein 78, NAC78_ARATH, Protein NTM1-like 11 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, AthalianaCistrome v4_May2016 2, JASPAR 2024 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:NAC/NAM, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 567 |
| Pfam Domains: | 9-136 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MGRGSVTSLAPGFRFHPTDEELVRYYLKRKVCNKPFKFDAISVTDIYKSEPWDLPDKSKL 60 61 KSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRNGSRVVGMKKTLVYHKGR 120 121 APRGERTNWVMHEYRLSDEDLKKAGVPQEAYVLCRIFQKSGTGPKNGEQYGAPYLEEEWE 180 181 EDGMTYVPAQDAFSEGLALNDDVYVDIDDIDEKPENLVVYDAVPILPNYCHGESSNNVES 240 241 GNYSDSGNYIQPGNNVVDSGGYFEQPIETFEEDRKPIIREGSIQPCSLFPEEQIGCGVQD 300 301 ENVVNLESSNNNVFVADTCYSDIPIDHNYLPDEPFMDPNNNLPLNDGLYLETNDLSCAQQ 360 361 DDFNFEDYLSFFDDEGLTFDDSLLMGPEDFLPNQEALDQKPAPKELEKEVAGGKEAVEEK 420 421 ESGEGSSSKQDTDFKDFDSAPKYPFLKKTSHMLGAIPTPSSFASQFQTKDAMRLHAAQSS 480 481 GSVHVTAGMMRISNMTLAADSGMGWSYDKNGNLNVVLSFGVVQQDDAMTASGSKTGITAT 540 541 RAMLVFMCLWVLLLSVSFKIVTMVSAR |
| Interface Residues: | 77, 82, 93, 95, 97, 117, 122, 123 |
| 3D-footprint Homologues: | 7xp3_B |
| Binding Motifs: | M1404_1.02 tarCAmGccAva M0634 CTTGttsyvCAAGaAA M0651 CTTGttsyrCAAGaAAc MA1677.1 haCAAGAAAcmw MA1677.2 CAAGAAA |
| Binding Sites: | MA1677.2.11 / MA1677.2.19 MA1677.1.1 MA1677.1.10 / MA1677.1.8 MA1677.1.11 / MA1677.1.9 MA1677.1.11 / MA1677.1.12 MA1677.1.13 MA1677.1.12 / MA1677.1.14 MA1677.1.13 / MA1677.1.15 MA1677.1.14 / MA1677.1.16 MA1677.1.15 / MA1677.1.17 MA1677.1.16 / MA1677.1.18 MA1677.1.17 / MA1677.1.19 MA1677.1.2 MA1677.1.20 MA1677.1.2 / MA1677.1.3 MA1677.1.3 / MA1677.1.4 MA1677.1.5 MA1677.1.4 / MA1677.1.6 MA1677.1.5 / MA1677.1.7 MA1677.1.6 / MA1677.1.8 MA1677.1.7 / MA1677.1.9 MA1677.1.18 MA1677.1.19 MA1677.1.10 MA1677.1.20 MA1677.2.13 / MA1677.2.14 / MA1677.2.4 / MA1677.2.8 MA1677.2.17 / MA1677.2.2 MA1677.2.1 / MA1677.2.12 / MA1677.2.15 / MA1677.2.16 / MA1677.2.18 / MA1677.2.20 / MA1677.2.3 / MA1677.2.5 / MA1677.2.6 / MA1677.2.9 MA1677.2.10 MA1677.2.7 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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