Transcription Factor
| Accessions: | A0A1D6GM13 (JASPAR 2024) |
| Names: | A0A1D6GM13_MAIZE |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 657 |
| Pfam Domains: | 118-279 Ribosomal protein L16p/L10e 388-451 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MMSLQPAGVVFSGLERKESPILVGSCCVFRSIPPKAQHLPVACRDAQNPRRHGSIPRPHS 60 61 LYKVSLSSLQALDAPLPRFAASADTDCLPQLPSPWAECIAIMLLIKLSFMFLKLCLGPAR 120 121 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEA 180 181 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 240 241 RVDIGQVLLSVRCKDNNAAHASEALRRAKFKFPGRQKIIESRKWGFTKFSRADYLKYKSE 300 301 GRIVPDGVNAKLLGNHGRLEKRAPGKAFLDANTYLCAIAFPELTKQSFLQQRETGLQREY 360 361 WDEIAPLSVGSENQAEENPVPKEKRPKRLEWTKEDEEKLVNAWFIHSNDPISGNNKSGSS 420 421 FWGQIAATYNSTSDPIRHRTAKQLKDHWVTYNREVTKFNGFYLQEERLRQSGADDAMVMD 480 481 AAMARFEGKMGHPFKRHHWWQVVCYEPKWSAKHGLGSGSDSTANKRTRLGVSGEYSSGGT 540 541 EDTEEEVPRTVGRDRAKAAARKTKTKGKGKEATSSESTSEAFKMKNLWGGLVKAKLLKQW 600 601 NILKGRSTRDMDPAERRTHGRAVKMVEKELGNSNTIVALAGNTADLLDTRHVSADVC |
| Interface Residues: | 388, 441, 442, 445, 446, 449 |
| 3D-footprint Homologues: | 1vfc_A |
| Binding Motifs: | UN0434.1 csTCTCGCCTcs UN0434.2 TCTCGCCTc |
| Binding Sites: | UN0434.1.1 UN0434.1.10 / UN0434.1.14 UN0434.1.11 / UN0434.1.15 UN0434.1.12 / UN0434.1.16 UN0434.1.13 / UN0434.1.17 UN0434.1.14 / UN0434.1.18 UN0434.1.15 / UN0434.1.20 UN0434.1.16 UN0434.1.17 UN0434.1.18 UN0434.1.19 UN0434.1.2 UN0434.1.20 UN0434.1.3 / UN0434.1.4 UN0434.1.4 / UN0434.1.5 UN0434.1.5 / UN0434.1.7 UN0434.1.6 / UN0434.1.8 UN0434.1.10 / UN0434.1.7 UN0434.1.11 / UN0434.1.8 UN0434.1.13 / UN0434.1.9 UN0434.1.12 UN0434.1.19 UN0434.1.3 UN0434.1.6 UN0434.1.9 UN0434.2.1 / UN0434.2.17 UN0434.2.10 / UN0434.2.7 UN0434.2.11 / UN0434.2.2 UN0434.2.12 / UN0434.2.14 UN0434.2.13 UN0434.2.15 UN0434.2.16 / UN0434.2.19 UN0434.2.18 UN0434.2.20 / UN0434.2.6 UN0434.2.3 UN0434.2.4 / UN0434.2.5 UN0434.2.8 UN0434.2.9 |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.