Transcription Factor

						

			
Accessions: Q6R0E3 (JASPAR 2024)

			
Names: Protein TRF-LIKE 2, Telomere repeat-binding protein 5, TRP5_ARATH
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q6R0E3
Length: 630
Sequence: 
(in bold interface residues)		   1 MVLQKRPDYGFNGYEVPHTPRAARSPRKSAFKKKSENHQISSFDLLAAVAGKLLLEGGNS   60
  61 SSSSNNTSGNNEDQCAVKKEPLNGGDIMVEEETTNSDHDNNNAERSFFVSEILQKSHEMQ  120
 121 SFNRSPSPLKEFHFGSSSGITSDSSEKFETQELAYDESKINNGDCYRSESNDKKSMLGGL  180
 181 NFEAKLSRNVVGKDEKHIGSGFRKPIPQNPSTCSDDVDLHGKENDDGENFSACYRTKSFR  240
 241 STLRIGDRRIRKVWASKYCKVPPKLKDTTVTNSDLDLKSDYYSKKHCLKSLRSERNYPIK  300
 301 KRRYFDGYTASQSEETNKNEGQSGSPRKASAFLSSIACQKQPAAFQSPRDSNNVKLGIKS  360
 361 FRVPELFIEIPETATVGSLKRTVLEAVTSILGGGLRIGVLVHGKKVRDDSKMLLQTGLSL  420
 421 DTLSDTLGFCLEPNPPQSTKPLSPEDSDFARPCNVPHTLTRCLPSPGKHAKPSNSVESDL  480
 481 DSKPSAPNRGKTIYSRALIPVSPLHAQALTVVPPRKTKRSEVAQRRIRRPFSVAEVEALV  540
 541 QAVERLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDR  600
 601 VLTAHAYWSQQQGKHQLLEGPQQLETSLGL
Interface Residues: 528, 567, 568, 571, 572, 575, 576
3D-footprint Homologues: 7c4r_A, 1vfc_A, 1w0t_A, 2qhb_A
Binding Motifs: MA1802.1 swwAAACCyy
MA1802.2 wAAACCy
			
Publications: Karamysheva ZN, Surovtseva YV, Vespa L, Shakirov EV, Shippen DE. A C-terminal Myb extension domain defines a novel family of double-strand telomeric DNA-binding proteins in Arabidopsis. J Biol Chem 279:47799-807 (2004). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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