Transcription Factor
| Accessions: | T05457 (AthalianaCistrome v4_May2016), Q9S851 (JASPAR 2024) |
| Names: | AT1G76420, CUC3, T05457;, ANAC031, NAC domain-containing protein 31, NAC domain-containing protein CUC3, NAC31_ARATH, Protein CUP-SHAPED COTYLEDON 3 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 334 |
| Pfam Domains: | 22-150 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MMLAVEDVLSELAGEERNERGLPPGFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLN 60 61 RCEPWELPEMAKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQL 120 121 VGMKKTLVFYKGRAPRGLKTKWVMHEYRLENDHSHRHTCKEEWVICRVFNKTGDRKNVGL 180 181 IHNQISYLHNHSLSTTHHHHHEALPLLIEPSNKTLTNFPSLLYDDPHQNYNNNNFLHGSS 240 241 GHNIDELKALINPVVSQLNGIIFPSGNNNNDEDDFDFNLGVKTEQSSNGNEIDVRDYLEN 300 301 PLFQEASYGLLGFSSSPGPLHMLLDSPCPLGFQL |
| Interface Residues: | 88, 93, 95, 104, 106, 108, 130, 134, 135, 136, 139 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M0666 rCGTRwrraACAmGyaAy M0700 CkTGtwhywCACGywA MA2045.1 / UN0372.1 wwggTTrCkTGTawhACAAGtwAy MA2045.2 TTrCkTGTawhACAAGtwA |
| Binding Sites: | UN0372.1.1 UN0372.1.5 UN0372.1.6 MA2045.1.2 / UN0372.1.7 MA2045.1.3 / UN0372.1.8 MA2045.1.1 / UN0372.1.2 UN0372.1.3 UN0372.1.4 MA2045.1.5 / UN0372.1.11 MA2045.1.6 / UN0372.1.12 UN0372.1.13 UN0372.1.14 UN0372.1.15 UN0372.1.10 UN0372.1.16 UN0372.1.17 MA2045.1.8 / UN0372.1.18 UN0372.1.19 UN0372.1.20 MA2045.1.4 / UN0372.1.9 MA2045.1.11 MA2045.1.14 MA2045.1.15 MA2045.1.7 MA2045.1.10 MA2045.1.13 MA2045.1.18 MA2045.1.12 MA2045.1.16 MA2045.1.17 MA2045.1.19 MA2045.1.20 MA2045.1.9 MA2045.2.1 MA2045.2.11 MA2045.2.14 MA2045.2.15 MA2045.2.3 MA2045.2.4 MA2045.2.6 MA2045.2.8 MA2045.2.2 MA2045.2.19 MA2045.2.20 MA2045.2.5 MA2045.2.7 MA2045.2.12 MA2045.2.13 MA2045.2.10 MA2045.2.16 MA2045.2.17 MA2045.2.18 MA2045.2.9 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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