Transcription Factor
| Accessions: | UP00289A (UniPROBE 20160601) |
| Names: | Hypothetical 141.5 kDa zinc finger protein in TUB1-CPR3 intergenic region, Yml081w |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q04545 |
| Description: | Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YML081w is not an essential gene |
| Length: | 152 |
| Pfam Domains: | 51-73 C2H2-type zinc finger 53-73 Zinc finger, C2H2 type 65-89 Zinc-finger double domain 79-102 C2H2-type zinc finger 81-102 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 IKRDISSTIYADRPPALSAPPCVGATGNDKIQVLPIPKKSRTIKTDKPRPFLCHICTRGF 60 61 VRQEHLKRHQRAHTNEKPFLCVFCGRCFARRDLVLRHQHKLHSALVSKESINSKDKTEID 120 121 AINDKNIIQIQGNKQTILPTPSNPLAKTAVQL |
| Interface Residues: | 32, 34, 35, 38, 39, 40, 41, 42, 43, 61, 62, 63, 64, 65, 66, 67, 68, 69, 89, 90, 91, 92, 93, 94, 95, 96, 97, 100 |
| 3D-footprint Homologues: | 1mey_C, 6ml4_A, 8h9h_G, 7eyi_G, 7n5w_A, 8ssq_A, 7w1m_H, 2kmk_A, 8ssu_A, 5kkq_D, 1g2f_F, 6jnm_A, 3uk3_C, 8cuc_F, 7y3l_A, 6u9q_A, 5yel_A, 4x9j_A, 2i13_A, 7txc_E, 5kl3_A, 7ysf_A, 6wmi_A, 5ei9_F, 2jpa_A, 1llm_D, 5und_A, 1ubd_C, 5k5i_A, 5v3j_F, 2gli_A, 1f2i_J, 6blw_A, 4m9v_C, 2lt7_A, 1tf3_A, 7y3m_I, 6e94_A, 1tf6_A, 6a57_A, 8gn3_A, 2wbs_A, 5yj3_D |
| Binding Motifs: | UP00289A_1 ryrwryTACCCCGCAyhwrys |
| Binding Sites: | AAGCGGGG ACCCCACA ACCCCACT ACCCCGCA ACCCCGCC ACCCCGCT ATGCGGGG CACCCCGC CCCCACAC CCCCACTC CCCCCGCA CCCCGCAA CCCCGCAC CCCCGCAG CCCCGCTC CCCCTCAC CCCCTCTC GCCCCGCA GCGGGGTA AGCGGGGA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.