Transcription Factor
| Accessions: | T001338_1.02 (CISBP 1.02) |
| Names: | LOC_Os08g36920, T001338_1.02; |
| Organisms: | Oryza sativa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:AP2 |
| Length: | 282 |
| Pfam Domains: | 138-187 AP2 domain |
| Sequence: (in bold interface residues) | 1 MTNRISAMGGNQEYMIRFDGHIDDASPSSATAEPPPPLPPPRPFAGRAISAEREHSVIVA 60 61 TLLHVISGYRTPPPEVFPAARAEVCGVCGMDQCLGCEFFAGESGVVSFDGAEKVAAAAAA 120 121 AAAGAAAGQRRRRKKKNKYRGVRQRPWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYDR 180 181 AAVEFRGPRAKLNFPFPEQLSAHDDSNGDASAAAKSDTLSPSPRSADADEQVEHTRWPQG 240 241 GGGGGGGGGGETGDQLWEGLQDLMQLDEGGLSWFPQSSDSWN |
| Interface Residues: | 143, 145, 147, 151, 153, 155, 162, 164 |
| 3D-footprint Homologues: | 1gcc_A, 5wx9_A, 7wq5_A |
| Binding Motifs: | M0044_1.02 kscGsCGyma |
| Related annotations: | PaperBLAST |
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