Transcription Factor
| Accessions: | Q8IGP5 (JASPAR 2024) |
| Names: | Chromatin-linked adaptor for MSL proteins, isoform B, Q8IGP5_DROME, RE54188p |
| Organisms: | Drosophila melanogaster |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q8IGP5 |
| Length: | 566 |
| Pfam Domains: | 127-149 C2H2-type zinc finger 127-149 C2H2-type zinc finger 127-149 Zinc finger, C2H2 type 365-387 Zinc finger, C2H2 type 365-388 C2H2-type zinc finger 365-387 C2H2-type zinc finger 379-403 Zinc-finger double domain 393-415 Zinc finger, C2H2 type 408-431 Zinc-finger double domain 420-431 C2H2-type zinc finger 421-443 Zinc finger, C2H2 type 421-443 C2H2-type zinc finger 435-459 Zinc-finger double domain 449-471 Zinc finger, C2H2 type 449-469 C2H2-type zinc finger 449-471 C2H2-type zinc finger 464-487 Zinc-finger double domain 477-499 Zinc finger, C2H2 type 477-499 C2H2-type zinc finger 491-515 Zinc-finger double domain 505-524 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MEDLTKNIIFTNAINGQPATIQYQTADGTILKQPKIEGQKTEQQPTFYYTTNGNGGTVNL 60 61 AQLATTDDNKTCYIAQPVGGYNYALVNGMPLNQGAALGIATVDAQGRIQIVNQNKPIAAN 120 121 TISNISFKCDVCSDMFPHLALLNAHKRMHTDGEQQQQQQHNAQAGGDSIAVVSAQGLVQA 180 181 QNIIGNGQMGQIQIVSSDTLEPVQQSVMQQQQHESKASKCINCGSSMLQQSKRKGPKQVR 240 241 CESCMQAEQTAQQQQQLFVAQDGQMAHPVQIISTTPQAQAQLQQIVAAQTGGTTPKREAS 300 301 SGSGHHPVKKRNSQQMTKCQKCNGSGVVLVGQHSHASHSGVGGSVKQSVTVKTECLSCRN 360 361 PSKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKP 420 421 YKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCE 480 481 ICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFALKRHRGIHQKYGQTAPRQTSS 540 541 DGMIVHKQEIPDMEDEAQQEVIIGGL |
| Interface Residues: | 365, 376, 377, 378, 379, 381, 382, 384, 385, 388, 403, 404, 405, 406, 407, 409, 410, 431, 432, 433, 434, 435, 437, 438, 457, 459, 460, 461, 462, 463, 464, 466, 467, 469, 487, 488, 489, 490, 491, 492, 493, 494, 495, 498, 516, 517, 518, 519, 521, 522 |
| 3D-footprint Homologues: | 2kmk_A, 5v3j_F, 8ssq_A, 7w1m_H, 6blw_A, 5yel_A, 8ssu_A, 2jpa_A, 1ubd_C, 7n5w_A, 6jnm_A, 3uk3_C, 1tf3_A, 1tf6_A, 5ei9_F, 5kl3_A, 5k5i_A, 8h9h_G, 6e94_A, 7ysf_A, 2lt7_A, 8cuc_F, 5kkq_D, 6ml4_A, 2drp_D, 2wbs_A, 8gn3_A, 1g2f_F, 7txc_E, 6u9q_A, 4x9j_A, 2gli_A, 1f2i_J, 4m9v_C, 7y3m_I, 6a57_A, 7y3l_A, 1llm_D, 5k5l_F, 5yj3_D |
| Binding Motifs: | MA1700.1 GwGmGAGCGAGAgr |
| Binding Sites: | MA1700.1.1 MA1700.1.10 MA1700.1.11 MA1700.1.12 MA1700.1.13 MA1700.1.14 MA1700.1.15 MA1700.1.16 / MA1700.1.6 MA1700.1.17 MA1700.1.18 MA1700.1.19 MA1700.1.2 MA1700.1.20 MA1700.1.3 MA1700.1.4 MA1700.1.5 MA1700.1.7 MA1700.1.8 MA1700.1.9 |
| Publications: | Soruco MM, Chery J, Bishop EP, Siggers T, Tolstorukov MY, Leydon AR, Sugden AU, Goebel K, Feng J, Xia P, Vedenko A, Bulyk ML, Park PJ, Larschan E. The CLAMP protein links the MSL complex to the X chromosome during Drosophila dosage compensation. Genes Dev 27:1551-6 (2013). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.