Transcription Factor

Accessions: Q8T0V5 (JASPAR 2024)
Names: Q8T0V5_DROME
Organisms: Drosophila melanogaster
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q8T0V5
Length: 357
Pfam Domains: 11-67 Homeobox domain
Sequence:
(in bold interface residues)
1 MDKGTMKRKQRRYRTTFNTLQLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQN 60
61 RRAKWRKQEKIGGLGGDYKEGALDLDVSYDDSAVLGQLDSALGGGGTLLPDTPPQSSNSL 120
121 DNELKASYGTGAMSPSRLSPNIFLNLNIDHLGLERGGSGLSMEWSTYPPQTQAQTHPQMD 180
181 SDNQLQQHPPQQHASDPIHAGSSSHHQQQQQQHQQEQHNPQLHPGLEFAASLSLDMTDGS 240
241 SAYDEMKFLSADVDQFTIDSFKADCILSMEQSQMQAYGGHSQLVGSSNELCLDGIGMSSF 300
301 GMEEGEPKSPPSLLVLDKSLPSLSIGVEGIADLVEQLHHHQHEGGPVGGGVITGDVM
Interface Residues: 10, 11, 12, 13, 14, 52, 53, 55, 56, 59, 60, 63, 64, 67
3D-footprint Homologues: 4j19_B, 2h1k_B, 1ig7_A, 1puf_A, 3d1n_M, 5zfz_A, 2r5y_A, 5zjt_E, 1fjl_B, 6a8r_A, 3cmy_A, 2lkx_A, 1jgg_B, 6m3d_C, 1zq3_P, 3lnq_A, 1nk2_P, 7q3o_C, 6es3_K, 2ld5_A, 5jlw_D, 3rkq_B, 4xrs_G, 2hdd_A, 4cyc_A, 1puf_B, 5flv_I, 3l1p_A, 2hos_A, 3a01_E, 7psx_B, 5hod_A, 1b72_A, 1e3o_C, 1le8_A, 1du0_A, 4qtr_D
Binding Motifs: MA0200.1 mTAATTr
MA0200.2 TAATTr
Binding Sites: MA0200.1.1
MA0200.1.10
MA0200.1.11
MA0200.1.12
MA0200.1.13
MA0200.1.14
MA0200.1.15
MA0200.1.16
MA0200.1.17
MA0200.1.18
MA0200.1.19
MA0200.1.2
MA0200.1.20
MA0200.1.3
MA0200.1.4
MA0200.1.5
MA0200.1.6
MA0200.1.7
MA0200.1.8
MA0200.1.9
MA0200.2.13 / MA0200.2.14 / MA0200.2.18 / MA0200.2.3 / MA0200.2.5
MA0200.2.9
MA0200.2.17 / MA0200.2.19
MA0200.2.20
MA0200.2.10 / MA0200.2.12 / MA0200.2.16
MA0200.2.1
MA0200.2.11
MA0200.2.15
MA0200.2.2
MA0200.2.4
MA0200.2.6
MA0200.2.7
MA0200.2.8
Publications: Noyes M.B, Meng X, Wakabayashi A, Sinha S, Brodsky M.H, Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic acids research 36:2547-60 (2008). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.