Transcription Factor
| Accessions: | Q8VWJ2 (JASPAR 2024), T17631 (AthalianaCistrome v4_May2016) |
| Names: | Probable WRKY transcription factor 28, WRK28_ARATH, WRKY DNA-binding protein 28, WRKY transcription factor 28, AT4G18170, T17631;, WRKY28 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:WRKY |
| Length: | 318 |
| Pfam Domains: | 172-229 WRKY DNA -binding domain |
| Sequence: (in bold interface residues) | 1 MSNETRDLYNYQYPSSFSLHEMMNLPTSNPSSYGNLPSQNGFNPSTYSFTDCLQSSPAAY 60 61 ESLLQKTFGLSPSSSEVFNSSIDQEPNRDVTNDVINGGACNETETRVSPSNSSSSEADHP 120 121 GEDSGKSRRKRELVGEEDQISKKVGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKY 180 181 GQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPIPTNLRGSSAA 240 241 AAMFSADLMTPRSFAHDMFRTAAYTNGGSVAAALDYGYGQSGYGSVNSNPSSHQVYHQGG 300 301 EYELLREIFPSIFFKQEP |
| Interface Residues: | 178, 179, 180, 182, 183, 194 |
| 3D-footprint Homologues: | 6j4e_B, 6j4f_F, 6j4g_B, 6ir8_A, 7z0u_A |
| Binding Motifs: | M0800 / MA1311.1 dwckTTGACTTtt M0844 aAAAGTCAAMg MA1311.2 wwrGTCAACrw MA1311.3 rGTCAAC |
| Binding Sites: | MA1311.1.8 MA1311.1.6 MA1311.1.1 MA1311.1.4 MA1311.1.3 MA1311.1.5 MA1311.1.2 MA1311.1.11 MA1311.1.12 MA1311.1.10 MA1311.1.13 MA1311.1.14 MA1311.1.15 MA1311.1.16 MA1311.1.17 MA1311.1.18 MA1311.1.19 MA1311.1.20 MA1311.1.7 MA1311.1.9 MA1311.2.1 MA1311.2.10 / MA1311.2.7 MA1311.2.11 MA1311.2.12 MA1311.2.13 MA1311.2.14 / MA1311.2.8 MA1311.2.15 / MA1311.2.9 MA1311.2.10 / MA1311.2.16 MA1311.2.11 / MA1311.2.17 MA1311.2.18 MA1311.2.12 / MA1311.2.19 MA1311.2.2 MA1311.2.20 / MA1311.2.9 MA1311.2.2 / MA1311.2.3 MA1311.2.4 MA1311.2.5 MA1311.2.3 / MA1311.2.6 MA1311.2.16 / MA1311.2.19 / MA1311.2.4 / MA1311.2.7 MA1311.2.5 / MA1311.2.8 MA1311.2.13 MA1311.2.14 MA1311.2.15 MA1311.2.17 MA1311.2.18 MA1311.2.20 MA1311.2.6 MA1311.3.1 / MA1311.3.10 / MA1311.3.13 / MA1311.3.14 / MA1311.3.15 / MA1311.3.16 / MA1311.3.17 / MA1311.3.19 / MA1311.3.4 / MA1311.3.5 / MA1311.3.8 MA1311.3.11 MA1311.3.12 MA1311.3.18 MA1311.3.2 / MA1311.3.3 MA1311.3.20 / MA1311.3.7 MA1311.3.6 MA1311.3.9 |
| Publications: | Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed] |
| Related annotations: | PaperBLAST |
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