Transcription Factor
| Accessions: | TFCP2 (HT-SELEX2 May2017) |
| Names: | ENSG00000135457, TFCP2 |
| Organisms: | Homo sapiens |
| Libraries: | HT-SELEX2 May2017 1 1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] |
| Notes: | TF family: CP2 experiment: HT-SELEX Hamming distance: 2 cycle: 4, TF family: CP2 experiment: Methyl-HT-SELEX Hamming distance: 2 cycle: 4 |
| Length: | 258 |
| Pfam Domains: | 34-240 CP2 transcription factor |
| Sequence: (in bold interface residues) | 1 FDASLSGIGQELGAGAYSMSDVLALPIFKQEESSLPPDNENKILPFQYVLCAATSPAVKL 60 61 HDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIFRVVFHDRRLQYTEHQQLEGWR 120 121 WNRPGDRILDIDIPMSVGIIDPRANPTQLNTVEFLWDPAKRTSVFIQVHCISTEFTMRKH 180 181 GGEKGVPFRVQIDTFKENENGEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRTPHE 240 241 KEKYQPSYETTILTECSP |
| Interface Residues: | 167, 169, 171, 191, 193, 195, 200, 219, 224, 227 |
| 3D-footprint Homologues: | 7cuh_A, 5mpf_B |
| Binding Motifs: | TFCP2_2 aaCyrGttyrawCyrGwt TFCP2_4 wACCGGTttwAACCgGwT TFCP2_methyl_1 awCyrGwtyrawCyrGwt TFCP2_methyl_3 AWCCGGTTyrAwCCGGTT |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.