Transcription Factor

						

			
Accessions: T138852_1.02 (CISBP 1.02)

			
Names: RFX2, T138852_1.02;
Organisms: Ornithorhynchus anatinus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:RFX
Length: 705
Pfam Domains:     1-164 RFX1 transcription activation region      
  181-247 RFX DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MQNSEDGRDSMTSGALRSAAAVQAPVVQPVPASQQRVLIQSSESAPKIAHMQQIPVPRVQ   60
  61 QVPQQDQTHVPIPFPSSFLFIQKGSIIYINVRLPRAAYTYNPEAQIYAPSSAASYFEAQG  120
 121 GGAQVTAVAASPSAIPSHSMVGIAMDVGGSQIISSSGAYVIHGGMDNTRHSLSQTSRSSP  180
 181 ATLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEHKLDPVNAASFGKLIRSVFMGLRTRRL  240
 241 GTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPAHQKQRYMTSQVGKSFGVSSAYV  300
 301 KSVPSQDQCLQSKRKTSLFPLDVAHVFPEFPTLDLSNILLQEEITLNDIKTLQLLYRRHC  360
 361 EATLDVVMNLQFHYIEKLWLSFWSSKPPSNEDGSIPMPPSEEHEVVIIPKDKLIAVCKCD  420
 421 SVLKWMRSCDHILYQTLVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQII  480
 481 QTKVSVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC  540
 541 QCEEGLVQKLEQDFKLTLQQQSSLDQWANWLDNVVTQVLKHHVGRPSFPKAARQFLLKWS  600
 601 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMGEFNDLAS  660
 661 LSVTLLDKESVIDGETDSAEARQEGGGLGKILLDAERNGHPFKGF
Interface Residues: 222, 226, 239, 243, 248
3D-footprint Homologues: 1dp7_P
Binding Motifs: M1532_1.02 chTrryaACs
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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