Transcription Factor
| Accessions: | T116761_1.02 (CISBP 1.02), Q9FPE8 (JASPAR 2024), T04402 (AthalianaCistrome v4_May2016) |
| Names: | AT1G25550, T116761_1.02;, HHO3_ARATH, MYB-domain transcription factor HHO3, Protein HRS1 HOMOLOG 3, Transcription factor HHO3, T04402; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:Myb/SANT, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:G2-like |
| Length: | 344 |
| Pfam Domains: | 211-262 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MMMFKSGDMDYTQKMKRCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIESCRKELSES 60 61 SEHVGGQSECSERTTSECGGAVFEEFMPIKWSSASSDETDKDEEAEKTEMMTNENNDGDK 120 121 KKSDWLRSVQLWNQSPDPQPNNKKPMVIEVKRSAGAFQPFQKEKPKAADSQPLIKAITPT 180 181 STTTTSSTAETVGGGKEFEEQKQSHSNRKQRRCWSPELHRRFLHALQQLGGSHVATPKQI 240 241 RDLMKVDGLTNDEVKSHLQKYRLHTRRPATPVVRTGGENPQQRQFMVMEGIWVPSHDTTN 300 301 NRVYAPVATQPPQSSTSGERSNRGCKSPATSSTTTHTPHLLPLS |
| Interface Residues: | 211, 251, 252, 255, 256, 259, 260 |
| 3D-footprint Homologues: | 6qec_A, 7d3t_D, 6j5b_C |
| Binding Motifs: | M1320_1.02 waGATtCysy M0383 / MA1386.1 rGAATmTTcwd M0394 dwwwmgAAkATTCy MA1386.2 wwwaAGATTCtww MA1386.3 aAGATTCt |
| Binding Sites: | MA1386.3.12 MA1386.3.1 / MA1386.3.3 / MA1386.3.5 / MA1386.3.6 / MA1386.3.7 / MA1386.3.8 MA1386.1.6 MA1386.1.10 MA1386.1.1 MA1386.1.11 MA1386.1.12 MA1386.1.13 MA1386.1.14 MA1386.1.15 / MA1386.1.17 MA1386.1.16 MA1386.1.18 MA1386.1.19 MA1386.1.2 MA1386.1.20 MA1386.1.3 MA1386.1.4 MA1386.1.5 MA1386.1.7 MA1386.1.8 MA1386.1.9 MA1386.2.1 MA1386.2.10 MA1386.2.11 MA1386.2.12 MA1386.2.13 MA1386.2.14 MA1386.2.15 MA1386.2.16 MA1386.2.17 MA1386.2.18 MA1386.2.19 MA1386.2.2 MA1386.2.20 MA1386.2.3 MA1386.2.4 MA1386.2.5 MA1386.2.6 MA1386.2.7 MA1386.2.8 MA1386.2.9 MA1386.3.10 / MA1386.3.13 / MA1386.3.15 / MA1386.3.19 MA1386.3.11 MA1386.3.14 / MA1386.3.4 MA1386.3.16 MA1386.3.17 / MA1386.3.18 / MA1386.3.20 MA1386.3.2 MA1386.3.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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