Transcription Factor

						

			
Accessions: T060938_1.02 (CISBP 1.02)

			
Names: NCU00340, T060938_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 722
Pfam Domains:    58-166 STE like transcription factor
  591-615 C2H2-type zinc finger
  591-615 Zinc finger, C2H2 type
  607-632 Zinc-finger double domain
  621-643 C2H2-type zinc finger
  621-643 Zinc finger, C2H2 type
Sequence: 
(in bold interface residues)		   1 MYSSQHANMAAASQKPETFMLSTEAQQALPHDAQVALQQVDNLKYFLISAPVDWQPDQYI   60
  61 RRFLLPTGEYVSCVLWNNLFHISGTDIVRCLSFRFQAFGRPVKNSKKFEEGIFSDLRNLK  120
 121 AGSDASLEEPKSPFLDFLYKNNCIRTQKKQKVFFWYSVPHDRLFLDALERDLKREKMGQE  180
 181 ATTVAVSEPALSFQYDSSQSLFESLTKAQQANSSSFPAQQLAFQSQSTSPILRAADSMPP  240
 241 PQMMQPMPSQMMQPMGQNMGQQMSQTMSQSMAPLSDGLEAMVSYGAMTMGPAMTCPQPMV  300
 301 KREPDYGRVQYTQNGVPITQVHQRHTSMPAYGLECSPAPSFVSSHFEDYSQRGLSFEPLT  360
 361 PPHQQMGVIGEPAYIANEETGLYTAIPDHLNAGALNGMMQLPPSNLAAPSYPRSYASSSI  420
 421 SQDHARGYSPMAAYTVIEGSPTYKQRRRRSSIPPSVLSATTAIAAGTPGVYKPSDLRRSV  480
 481 SASVGPVAEGDESADNSPPGLTYSNPAINMARQQHHEMLELSRHGTPLSTVEGSPALNPM  540
 541 NISMGQSYGPLNDDELAPMSERQMSQGHPGVIRRARSATVSELGPYPQKSHSCPIPSCGR  600
 601 VFKRLEHLKRHVRTHTQERPYVCSYCQKAFSRSDNLAQHKRTHDRGDGSEGTSNLSGEEE  660
 661 EEYSSPTSEGGYVHASGAPSNGNSSTPQSTMYNNLQTLSMPMTISEPQPINTGEMMRNEL  720
 721 EF
Interface Residues: 576, 577, 578, 579, 603, 604, 605, 606, 607, 609, 610, 611, 631, 632, 633, 634, 635, 636, 637, 638, 639, 642
3D-footprint Homologues: 2kmk_A, 1tf3_A, 8cuc_F, 7y3l_A, 7n5w_A, 3uk3_C, 5v3j_F, 6blw_A, 5k5l_F, 6u9q_A, 5yel_A, 4x9j_A, 2gli_A, 1f2i_J, 6e94_A, 5kkq_D, 8gn3_A, 5ei9_F, 2jpa_A, 1g2f_F, 6jnm_A, 5kl3_A, 1ubd_C, 7txc_E, 5k5i_A, 1llm_D, 7ysf_A, 6ml4_A, 2drp_D, 8h9h_G, 4m9v_C, 2lt7_A, 7y3m_I, 6a57_A, 7w1m_H, 8ssq_A, 2wbs_A, 1tf6_A, 5yj3_D
Binding Motifs: M0464_1.02 kymAGGGGtw
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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