Transcription Factor
| Accessions: | T049227_1.02 (CISBP 1.02) |
| Names: | T049227_1.02;, Zfp410 |
| Organisms: | Mus musculus |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 345 |
| Pfam Domains: | 220-243 Zinc finger, C2H2 type 235-261 Zinc-finger double domain 249-274 C2H2-type zinc finger 249-273 Zinc finger, C2H2 type 266-292 Zinc-finger double domain 279-303 Zinc finger, C2H2 type 281-303 C2H2-type zinc finger 295-321 Zinc-finger double domain 311-333 Zinc finger, C2H2 type 311-333 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MLSDELESKPELLVQFVQNTSIPLGQGLVESEAKDITCLSLLPVTEASECSRLMLPDETP 60 61 NHANSSKEVPSSAVLRSLQVNVGPDGEETRAQTVQKSPEFLTTPESPSLLQDLQPSDSTS 120 121 FILLNLTRAGLGSSAEHFVFVQDETEDSGADFLSAESTDSSIPWFLRVQELAHDSLIAAT 180 181 RAQLAKNAKTGSNGENVHLGSGDGQPKDSGPLPQAEKKLKCTVEGCDRTFVWPAHFKYHL 240 241 KTHRNERSFICPAEGCGKSFYVLQRLKVHMRTHNGEKPFMCHESGCGKQFTTAGNLKNHR 300 301 RIHTGEKPFLCEAQGCGRSFAEYSSLRKHLVVHSELEIEPRASRV |
| Interface Residues: | 232, 233, 234, 235, 236, 237, 238, 240, 241, 244, 249, 261, 262, 263, 264, 265, 267, 268, 291, 292, 293, 294, 295, 296, 297, 298, 299, 302, 321, 322, 323, 324, 325, 326, 327, 328, 329, 332 |
| 3D-footprint Homologues: | 6wmi_A, 5ei9_F, 8ssq_A, 5und_A, 8ssu_A, 6ml4_A, 5kkq_D, 2i13_A, 7eyi_G, 7ysf_A, 2gli_A, 2jpa_A, 1ubd_C, 2kmk_A, 7w1m_H, 6jnm_A, 8cuc_F, 7y3l_A, 7n5w_A, 1tf3_A, 1g2f_F, 7txc_E, 5kl3_A, 1tf6_A, 1mey_C, 1f2i_J, 6blw_A, 5yel_A, 4x9j_A, 8h9h_G, 6e94_A, 2lt7_A, 7y3m_I, 6a57_A, 5k5i_A, 3uk3_C, 2wbs_A, 5yj3_D, 1llm_D, 5v3j_F, 6u9q_A, 4m9v_C, 8gn3_A |
| Binding Motifs: | M0423_1.02 TGGGATRG |
| Related annotations: | PaperBLAST |
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