Transcription Factor
| Accessions: | UP00080A (UniPROBE 20160601) |
| Names: | GATA binding protein 5, GATA-binding factor 5, Gata5, Transcription factor GATA-5 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P97489 |
| Description: | GATA binding protein 5 |
| Length: | 135 |
| Pfam Domains: | 22-55 GATA zinc finger 76-109 GATA zinc finger |
| Sequence: (in bold interface residues) | 1 PGRRTSFVPDFLEEFPGEGRECVNCGALSTPLWRRDGTGHYLCNACGLYHKMNGVNRPLV 60 61 RPQKRLSSSRRSGLCCSNCHTATTTLWRRNSEGEPVCNACGLYMKLHGVPRPLAMKKESI 120 121 QTRKRKPENPAKIKG |
| Interface Residues: | 31, 32, 34, 44, 48, 85, 86, 88, 98, 102, 103, 106, 123, 125, 126 |
| 3D-footprint Homologues: | 4hc9_A, 3vd6_C, 1gat_A, 3dfx_B, 4gat_A |
| Binding Motifs: | UP00080A_1 wwwrcTGATAAGrrgat UP00080A_2 rmcmrAGATATCwgybk |
| Binding Sites: | AGATAACA AAGATAAG ACTGATAA AGAGATAA AGATAACG AGATAAGA ATCTTATC CAGATAAG CCTTATCA CGAGATAA CGATAAGA CTCTTATC CTGATAAG CTTATCAA CTTATCTA CTTATCTC GATAAGAA GATAAGGA GCTTATCA TCTTATCA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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