Transcription Factor

						

			
Accessions: T060963_1.02 (CISBP 1.02)

			
Names: NCU05242, T060963_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 1009
Pfam Domains:     74-98 Zinc finger, C2H2 type
    74-99 C2H2-type zinc finger
  104-128 C2H2-type zinc finger
  477-774 Fungal specific transcription factor domain 
Sequence: 
(in bold interface residues)		   1 MPQYQEPTPPHNIKQEDEQERGRRRSRSDDKDVEGLDLEDMEDGDGNGNDAHSSNEEGPA   60
  61 RKRRRSRKGLDKKFECPEQGCGKSYSRAEHLYRHQLNHNPKQVYKCGIGDCQRTFVRLDL  120
 121 CNRHKERHTAKGSALSRKDSLMSLASPTTDGRPPFMTQGSASPETNRLGNGKGRTLSMQF  180
 181 NSPKDAMGSPYTPMTASAPTNGYSNGIDYMQHDAHYQHMAGQRSLQHSPTGPQRPSVQTN  240
 241 VGPYGVLSPVSTQPGYHGHSVNTSQSAVPYVTPQNFPPFSLPPSDFATTSPAAVVSREAQ  300
 301 QQAYVPLTTAESFDHHPQDTGEIVRLDQMSMQQTMPVFGTDSILNKSPYVGMPEDFMAYL  360
 361 FNTHGEGSPTVVPVQGLNYGEFSTNQYPFYNDPSQMGYFPQMAPQQIMSVENLLDQNLPE  420
 421 SVISDPKSAEIFELIKERFHENGHTPIERQRDNILEGDRNNENHMLSRKMMQAYIVSYWL  480
 481 HFSDQIPILHKPTFSPDKTPNLLLIAMMTIGAACLDKAYGQKVTKAGAELSNFLAWHLRW  540
 541 EMFQDPNCRPPAKLWVFQTLLLLELYEKMYSTRELHERAHIHHATTITLMRRGRALIGKS  600
 601 ALDSPPNPRDDKTNGSRHSSTSGMAHTPDEWWNHWITNEATRRAAFAAFVIDSIHATMFG  660
 661 HSTVMVAHEMRLPLPCDDKLWKAKSSAEVGKIEAELMSQGKPIGFLDGLKRTLNGQTVQT  720
 721 NSFGRTILMAGLLSVSWHMNQRDLQVNSLGATTALGGRDKWRTTLTRAFDSWKKEFDRAL  780
 781 EEKRGDMADPYFFGVRGNETDVVFESRVVLHHLAHMAMHIDIVDCQIFARAKRLLGRAIG  840
 841 AQDLSSATRRMKDQWAPSAKARDATFYALQFLQSVLLPTGSGSPQSNGYSSHMDEEYSAR  900
 901 DDVLLNRPWVLYFAALVVWCYGYALEGACPGLPMPTTHQDAVRQMREYLIKYGSIQSPED  960
 961 LKSMRGINQNTALLVVLKDTFRVTRWELLHEGATLLNNCILLNAGATVP
Interface Residues: 59, 62, 74, 86, 87, 88, 89, 90, 92, 93, 95, 96, 99, 116, 117, 118, 119, 120, 122, 123, 127, 136, 137, 138, 139, 140, 143
3D-footprint Homologues: 6e94_A, 6ml4_A, 5v3j_F, 2kmk_A, 7y3l_A, 7n5w_A, 8cuc_F, 6jnm_A, 8gn3_A, 5kl3_A, 2gli_A, 6blw_A, 6u9q_A, 1f2i_J, 7ysf_A, 4x9j_A, 5yj3_D, 1g2f_F, 5ei9_F, 7w1m_H, 2lt7_A, 1llm_D, 8h9h_G, 1tf3_A, 1tf6_A, 6a57_A, 2jpa_A, 1ubd_C, 2wbs_A
Binding Motifs: M0478_1.02 cGyGGGgk
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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