Transcription Factor
| Accessions: | T073820_1.02 (CISBP 1.02), Q9SZD1 (JASPAR 2024) |
| Names: | AT4G29000, T073820_1.02;, AtTCX5, Protein tesmin/TSO1-like CXC 5, TCX5_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:CxC |
| Length: | 603 |
| Pfam Domains: | 129-168 Tesmin/TSO1-like CXC domain 214-253 Tesmin/TSO1-like CXC domain |
| Sequence: (in bold interface residues) | 1 MGEDGGGGEFPPKKDGVEEGFPTKKPARQLDFTGGSDEHSLSKPAAPTVVATSVKPIISS 60 61 SVPSTIRPGMTIAIGQVTQVRPTLPMATTMSNPPSQSQIVNAPIRHPIPESPKARGPRPN 120 121 VEGRDGTPQKKKQCNCKHSRCLKLYCECFASGTYCDGCNCVNCFNNVDNEPARREAVEAT 180 181 LERNPFAFRPKIASSPHGGRDKREDIGEVVLLGKHNKGCHCKKSGCLKKYCECFQANILC 240 241 SENCKCLDCKNFEGSEERQALFHGEHSNHMAYLQQAANAAITGAVGSSGFAPSPAPKRRK 300 301 GQEILFNQAIKDSSRLSHFPQVNNGRTGGPTSGTSPSPVSRAGGNASSVPSKFVYRSLLA 360 361 DIIQPHDVRALCSVLVTVAGEAAKTSTDKRNEIENRVDDQTETSLASSAQDQPQGNNNAA 420 421 DVEMVATDHNQADKSGPEESNSDGVDASKVTPLSPATLALMCDEQDTIFMVAAPSPNGSV 480 481 DPNGCRPNSQGQSEIYAEQERLVLTKFRDCLNRLISYAEIKESKCLSLARMHIQPPAIAT 540 541 VKTENGIQQQVPIVNGASRTNCQPTLNKPQPMQLMNTTSAAPATATNTQHLQKPPALSEK 600 601 KDP |
| Interface Residues: | 78, 80, 81, 82, 145, 230 |
| 3D-footprint Homologues: | 8g9l_B, 5f0q_A, 5fd3_A |
| Binding Motifs: | M0591_1.02 arTTTGAAtt UN0411.1 aaTTCAAAyt UN0411.2 aTTCAAAy |
| Related annotations: | PaperBLAST |
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