Transcription Factor

Accessions: UP00433A (UniPROBE 20160601)
Names: None, PF11_0442, putative, transcription factor with AP2 domain(s)
Organisms: Plasmodium falciparum
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Description: transcription factor with AP2 domain(s), putative: putative Plasmodium falciparum transcription factor, AP2 domain
Length: 103
Pfam Domains: 40-88 AP2 domain
Sequence:
(in bold interface residues)
1 NSTVNRSNNKVIKNESEFEYLLELSDKEGPNLDNPEDLKCDVAGVYWDKRSWIASWYDNG 60
61 KRYYKSFSAKTHGFYKSKFWAIKVRLSKVKGQTIFGKNSRKNK
Interface Residues: 47, 49, 50, 61, 65, 69, 70, 71
3D-footprint Homologues: 7uin_D, 1mnm_A, 1xsd_A
Binding Motifs: UP00433A_1 yygtrwyAGCTAGCTvrckmtg
Binding Sites: AAAAAATA
CCCACCCC
GGAAATAA
GGCGGGGA
TTATAAAA
GGGTGGGA
AAAAATAT
AAGAGAAG
AAGGGGAA
AGAGAAAG
AGCTAGCT
AGTAGGGG
ATAGGAAA
CAGCTAGC
GAGCTAGC
GATAAAAA
GGCTAGCC
GGGGAAAA
GGGGATAA
TATAAAAA
Publications: Campbell TL, De Silva EK, Olszewski KL, Elemento O, Llinás M. Identification and genome-wide prediction of DNA binding specificities for the ApiAP2 family of regulators from the malaria parasite. PLoS Pathog : (2010). [Pubmed]
Related annotations: PaperBLAST

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