Transcription Factor

						

			
Accessions: T084293_1.02 (CISBP 1.02)

			
Names: T084293_1.02;, TIFY2B
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:GATA
Length: 295
Pfam Domains:    76-107 tify domain
  140-165 Divergent CCT motif
  141-184 CCT motif
  217-253 GATA zinc finger
Sequence: 
(in bold interface residues)		   1 MDDLHGRNGRMHIGVAQNPMHVQYEDHGLHHIDNENSMMDDHADGGMDEGVETDIPSHPG   60
  61 NSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLG  120
 121 SPHQNNRGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQF  180
 181 TSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTL  240
 241 CNACGLMWANKGTLRDLSKVPPPQTPQHLSLNKNEDANLEADQMMEVTGDISNTQ
Interface Residues: 159, 166, 170, 173, 175, 179, 180, 228, 229, 231, 242, 246, 247, 250
3D-footprint Homologues: 7cvq_F, 7cvo_A, 7c9o_A, 3vd6_C, 1gat_A, 4hc9_A, 3dfx_B, 4gat_A
Binding Motifs: M0762_1.02 aGATswd
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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