Transcription Factor
| Accessions: | T057653_1.02 (CISBP 1.02) |
| Names: | lsl-1, T057653_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 318 |
| Pfam Domains: | 36-55 C2H2-type zinc finger 37-55 C2H2-type zinc finger 52-75 Zinc-finger double domain 65-87 C2H2-type zinc finger 65-87 Zinc finger, C2H2 type 65-87 C2H2-type zinc finger 82-102 Zinc-finger double domain 93-103 C2H2-type zinc finger 93-115 C2H2-type zinc finger 93-115 Zinc finger, C2H2 type 254-275 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MSIIDDRTDPSYDGEDYEASITFGTYQQEEVAPFAVHQCNVCNKMFMNYKGLQQHSVIHT 60 61 DTKPYICDVCGRGFRYKSNMFEHRTVHTGYTPYVCPFCGKQFRLKGNMKKHMRTHVTSKE 120 121 ELEAAYRPYSSNRRSSGIIPSDALVIRGTSMPYYNPEKKRSVPKLLLGKDPSKWVDMICR 180 181 NQLIPLSSFDDKIMRATMRLTNCHMASDVLEQAKPLEFEIFRCPICKCECSGREDCQLHM 240 241 YASHDKKEAEEPNYCTKCMRVFADVDMYRQHQSYHSRVQLMIRNNELEMGSPEVDISQIC 300 301 YSMITNTENEMNILKPSA |
| Interface Residues: | 26, 47, 48, 49, 50, 51, 53, 54, 56, 57, 60, 75, 76, 77, 78, 79, 81, 82, 83, 84, 103, 104, 105, 106, 107, 108, 109, 110, 111, 114 |
| 3D-footprint Homologues: | 5kkq_D, 7n5w_A, 6jnm_A, 6ml4_A, 1tf3_A, 4x9j_A, 1g2f_F, 5kl3_A, 1ubd_C, 5ei9_F, 2kmk_A, 5v3j_F, 7w1m_H, 6blw_A, 6u9q_A, 2gli_A, 8gn3_A, 8h9h_G, 7y3m_I, 7ysf_A, 2lt7_A, 6e94_A, 1tf6_A, 6a57_A, 2jpa_A, 3uk3_C, 8cuc_F, 7y3l_A, 2wbs_A, 7txc_E, 1llm_D, 2drp_D, 8ssq_A, 5k5i_A, 5yel_A, 1f2i_J, 4m9v_C, 5yj3_D, 2pjr_A |
| Binding Motifs: | M0455_1.02 TACkGTAgyw |
| Related annotations: | PaperBLAST |
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