Transcription Factor
| Accessions: | T03383 (AthalianaCistrome v4_May2016), Q9C635 (JASPAR 2024) |
| Names: | AT1G46264, HSFB4, T03383;, AtHsf-02, AtHsfB4, Heat stress transcription factor B-4, HSFB4_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:HSF |
| Length: | 348 |
| Pfam Domains: | 35-127 HSF-type DNA-binding |
| Sequence: (in bold interface residues) | 1 MAMMVENSYGGYGGGGGERIQLMVEGQGKAVPAPFLTKTYQLVDDPATDHVVSWGDDDTT 60 61 FVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCE 120 121 IHRRKTSQMIPQQHSPFMSHHHAPPQIPFSGGSFFPLPPPRVTTPEEDHYWCDDSPPSRP 180 181 RVIPQQIDTAAQVTALSEDNERLRRSNTVLMSELAHMKKLYNDIIYFVQNHVKPVAPSNN 240 241 SSYLSSFLQKQQQQQPPTLDYYNTATVNATNLNALNSSPPTSQSSITVLEDDHTNHHDQS 300 301 NMRKTKLFGVSLPSSKKRSHHFSDQTSKTRLVLDQSDLALNLMTASTR |
| Interface Residues: | 79, 80, 85, 87, 88, 89, 91, 92, 101, 107, 110, 111, 123, 178, 179 |
| 3D-footprint Homologues: | 5hdn_C, 5d5v_B, 5d5w_B, 3hts_B, 7dci_A, 7vw3_A, 1nwq_C |
| Binding Motifs: | M0462 AGAAgcTTCTAGAAg MA2020.1 rGAAGtTTCYrr MA2020.2 GAAGtTTCYr |
| Binding Sites: | MA2020.1.1 MA2020.1.10 MA2020.1.11 MA2020.1.12 MA2020.1.13 MA2020.1.14 MA2020.1.15 MA2020.1.16 MA2020.1.17 MA2020.1.18 MA2020.1.19 MA2020.1.2 MA2020.1.20 MA2020.1.3 MA2020.1.4 MA2020.1.5 MA2020.1.6 MA2020.1.7 MA2020.1.8 MA2020.1.9 MA2020.2.1 MA2020.2.10 MA2020.2.11 MA2020.2.12 MA2020.2.13 MA2020.2.14 MA2020.2.15 MA2020.2.16 MA2020.2.17 MA2020.2.18 / MA2020.2.2 / MA2020.2.3 MA2020.2.19 / MA2020.2.9 MA2020.2.20 MA2020.2.4 MA2020.2.5 MA2020.2.6 MA2020.2.7 MA2020.2.8 |
| Publications: | Wu C. Heat shock transcription factors: structure and regulation. Annu Rev Cell Dev Biol : (1995;11:441-69.). [Pubmed] |
| Related annotations: | PaperBLAST |
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