Transcription Factor
| Accessions: | T057645_1.02 (CISBP 1.02) |
| Names: | pag-3, T057645_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 336 |
| Pfam Domains: | 126-148 C2H2-type zinc finger 126-148 Zinc finger, C2H2 type 126-148 C2H2-type zinc finger 140-165 Zinc-finger double domain 154-172 C2H2-type zinc finger 154-176 Zinc finger, C2H2 type 154-176 C2H2-type zinc finger 169-192 Zinc-finger double domain 182-191 C2H2-type zinc finger 182-204 Zinc finger, C2H2 type 182-200 C2H2-type zinc finger 197-220 Zinc-finger double domain 209-232 C2H2-type zinc finger 210-232 Zinc finger, C2H2 type 210-232 C2H2-type zinc finger 224-247 Zinc-finger double domain 238-261 C2H2-type zinc finger 238-248 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MSTEHVSNVYSVESLLSNVEKSSVSPTESIEDRNEFMITEDVMSSWQRMAATISLQQKLL 60 61 MMQQTMPRPPPVNILGNFPFGFLNAPMFWQQYLRSMAMGIIPQNPESPSASVWNRTPTPP 120 121 VEIKPFHCQKCTKLFSTIAALEQHQQVHVSDKQFECKQCGKTFKRSSTLSTHLLIHSDTR 180 181 PYPCEYCGKRFHQKSDMKKHTYIHTGEKPHKCTVCGKAFSQSSNLITHTRKHTGFKPFAC 240 241 DVCGRTFQRKVDRRRHRESHHPGHPEECVSASQISSDLSPKGYMTPPTSNGYLDSSDEFL 300 301 NVFRLPAELLAIKAEMGEEMEEADDEEEKVLNLSVS |
| Interface Residues: | 136, 137, 138, 139, 140, 143, 147, 154, 164, 165, 166, 167, 168, 170, 171, 172, 173, 174, 175, 177, 192, 193, 194, 195, 196, 197, 198, 199, 200, 202, 220, 221, 222, 223, 224, 226, 227, 248, 249, 250, 251, 252, 255, 259 |
| 3D-footprint Homologues: | 5v3j_F, 6jnm_A, 8ssu_A, 5kkq_D, 5ei9_F, 6wmi_A, 5k5i_A, 7w1m_H, 5und_A, 1tf6_A, 2i13_A, 7ysf_A, 8ssq_A, 5yel_A, 2kmk_A, 6ml4_A, 8gn3_A, 2drp_D, 7eyi_G, 4m9v_C, 2lt7_A, 6e94_A, 6a57_A, 2jpa_A, 1ubd_C, 7n5w_A, 3uk3_C, 1tf3_A, 1g2f_F, 5k5l_F, 4x9j_A, 6blw_A, 2wbs_A, 6u9q_A, 1mey_C, 7txc_E, 5kl3_A, 1f2i_J, 2gli_A, 8h9h_G, 7y3l_A, 8cuc_F, 1llm_D, 7y3m_I, 5yj3_D |
| Binding Motifs: | M0451_1.02 chswGATTtw |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.