Transcription Factor
Accessions: | T102440_1.02 (CISBP 1.02) |
Names: | GRMZM2G135447, T102440_1.02; |
Organisms: | Zea mays |
Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
Notes: | experiment type:PBM, family:Homeodomain |
Length: | 364 |
Pfam Domains: | 100-141 KNOX1 domain 160-204 KNOX2 domain 237-258 ELK domain 277-316 Homeobox KN domain 282-317 Homeobox domain |
Sequence: (in bold interface residues) | 1 MDSFGDLGGGGSSSSRAASAPFLQLPLPASTSSAQQQVLFPLPDGPQQQHHHHSSRIPLR 60 61 QLLLLADPSSAAQHSASHRTKDMATVQGEMSSPAVDGDADAIKARIMSHPQYSALLAAYL 120 121 DCQKVGAPPDVSDRLSAMAAANLDAQPGPISRRRGPTTTRADDPELDQFMEAYCNMLVKF 180 181 HEEMARPIQEATEFFNSMERQLGSTISDSNCEVAGSSEDEQDASWPEEIDPCAEDKELKH 240 241 QLLRKYGGYLGGLRQEFSKRKKKGKLPKEARQKLLHWWELHYKWPYPSETEKMALAETTG 300 301 LDPKQINNWFINQRKRHWKPASEDMPFAVMEGGFHVAQGTAALYMDRPAVPPFMADGGMY 360 361 RLGS |
Interface Residues: | 260, 262, 263, 264, 265, 290, 291, 302, 303, 304, 305, 307, 308, 311, 312, 315, 316 |
3D-footprint Homologues: | 6fqp_B, 1mnm_C, 1puf_B, 6es3_K, 7q3o_C, 1k61_B, 8igr_C, 5jlw_D, 2xsd_C, 7xrc_C, 1au7_A, 1le8_A, 1fjl_B, 5zfz_A, 4xrm_B, 5zjt_E, 2hdd_A, 1b72_A, 6fqq_E, 5hod_A, 6a8r_A, 1du0_A, 2hos_A |
Binding Motifs: | M1211_1.02 smyGTCAh |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.