Transcription Factor
| Accessions: | A0A060D7H5 (JASPAR 2024) |
| Names: | A0A060D7H5_MAIZE, Fragment, G2-like transcription factor, Myb family transcription factor APL |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 376 |
| Pfam Domains: | 47-98 Myb-like DNA-binding domain 141-189 MYB-CC type transfactor, LHEQLE motif |
| Sequence: (in bold interface residues) | 1 MFPSKKATSSAAAAAAAVSSNDSRQQAMCVQADSGSGLVLTTDPKPRLRWTVELHERFVD 60 61 AVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEHSVKDAAAAME 120 121 MQRNAASSSGMMGRSMNDRSVHMNEAIRMQMEVQRRLHEQLEVQRHLQMRIEAQGKYMQS 180 181 ILEKAYQTIATGDLAACSPVAAGYKSLLGNPQAMLDVCSLKDMAPSMGFPSLQDLHMYGG 240 241 GGGHCLDLQQQMERPMEAFFASCDIGSLAKKRPVSPYADDDGGKSPMLWGEDDEGKGIVD 300 301 HFQMAPPMMDAAGIDVMDSIADVYGDAKHMTMSSDSTGSKGGGFDVRLERPSLRRPHMGG 360 361 SPSVLGGGQTRNLSYG |
| Interface Residues: | 47, 87, 88, 91, 92, 95, 96, 190, 191 |
| 3D-footprint Homologues: | 6j5b_C, 6qec_A, 7d3t_D, 4wuh_B |
| Binding Motifs: | MA1830.1 wwwaAarGAATATTCTttttykw MA1830.2 AarGAATATTCTtttt |
| Binding Sites: | MA1830.1.1 MA1830.1.10 MA1830.1.11 MA1830.1.12 MA1830.1.13 MA1830.1.14 MA1830.1.15 MA1830.1.16 MA1830.1.17 MA1830.1.18 MA1830.1.19 MA1830.1.2 / MA1830.1.5 MA1830.1.20 MA1830.1.3 / MA1830.1.7 MA1830.1.4 / MA1830.1.8 MA1830.1.12 / MA1830.1.5 MA1830.1.19 / MA1830.1.6 MA1830.1.7 MA1830.1.8 MA1830.1.9 MA1830.1.1 MA1830.1.10 MA1830.1.11 MA1830.1.13 MA1830.1.14 MA1830.1.15 MA1830.1.16 MA1830.1.17 MA1830.1.18 MA1830.1.2 MA1830.1.20 MA1830.1.3 MA1830.1.4 MA1830.1.6 MA1830.1.9 MA1830.2.1 MA1830.2.10 MA1830.2.11 MA1830.2.12 / MA1830.2.5 MA1830.2.13 MA1830.2.14 MA1830.2.15 MA1830.2.16 MA1830.2.17 MA1830.2.18 MA1830.2.19 MA1830.2.2 MA1830.2.20 MA1830.2.3 MA1830.2.4 MA1830.2.6 MA1830.2.7 MA1830.2.8 MA1830.2.9 |
| Publications: | Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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