Transcription Factor
| Accessions: | T11447 (AthalianaCistrome v4_May2016), Q9LSH5 (JASPAR 2024) |
| Names: | ANAC057, AT3G17730, T11447;, NAC domain containing protein 57, No apical meristem family protein, Q9LSH5_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 246 |
| Pfam Domains: | 6-133 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MAPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWDLAEKSFLPSR 60 61 DPEWYFFGPRDRKYPNGFRTNRATRGGYWKSTGKDRRVTSQSRAIGMKKTLVYYKGRAPQ 120 121 GIRTDWVMHEYRLDDKDCDDPSSLQDSYALCRVFKKNGICSELESERQLQTGQCSFTTAS 180 181 MEEINSNNNNNYNNDYETMSPEVGVSSACVEEVVDDKDDSWMQFITDDAWDTSSNGAAMG 240 241 HGQGVY |
| Interface Residues: | 74, 79, 90, 92, 94, 114, 119, 120 |
| 3D-footprint Homologues: | 7xp3_B |
| Binding Motifs: | M0675 aGrTtrCkTGtdkhwCAMGyw M0682 wrCkTGtrkhaCAMGyA UN0346.1 haCAAGAAAym MA2034.1 waCAAGTAAyh MA2034.2 CAAGTAA |
| Binding Sites: | MA2034.1.10 / UN0346.1.13 MA2034.1.11 / UN0346.1.14 UN0346.1.16 UN0346.1.17 MA2034.1.12 / UN0346.1.18 UN0346.1.4 MA2034.1.6 / UN0346.1.7 MA2034.1.7 / UN0346.1.9 MA2034.1.8 / UN0346.1.11 UN0346.1.12 UN0346.1.1 UN0346.1.10 UN0346.1.15 UN0346.1.19 MA2034.1.3 / UN0346.1.2 MA2034.1.13 / UN0346.1.20 UN0346.1.3 UN0346.1.5 UN0346.1.6 UN0346.1.8 MA2034.1.1 MA2034.1.14 / MA2034.1.15 MA2034.1.16 MA2034.1.17 MA2034.1.18 MA2034.1.19 MA2034.1.2 MA2034.1.20 MA2034.1.4 MA2034.1.5 MA2034.1.9 MA2034.2.1 MA2034.2.13 / MA2034.2.18 / MA2034.2.20 / MA2034.2.3 / MA2034.2.9 MA2034.2.12 / MA2034.2.14 / MA2034.2.15 / MA2034.2.6 / MA2034.2.8 MA2034.2.10 / MA2034.2.11 / MA2034.2.19 / MA2034.2.7 MA2034.2.5 MA2034.2.16 / MA2034.2.4 MA2034.2.17 MA2034.2.2 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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